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    nuclear speckle splicing regulatory-like protein (DUF2040) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817271, updated on 18-Sep-2024

    Summary

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    Official Full Name
    nuclear speckle splicing regulatory-like protein (DUF2040)
    Primary source
    TAIR:AT2G27285
    Locus tag
    AT2G27285
    See related
    Araport:AT2G27285
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (11675814..11678118, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene coiled-coil protein (DUF2040) Neighboring gene FAM210B-like protein, putative (DUF1279) Neighboring gene NTM1-like 8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_128287.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nuclear speckle splicing regulatory-like protein (DUF2040)
    NP_565644.1
    • Coiled-coil domain-containing protein 55 (DUF2040); EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2040, coiled-coil (InterPro:IPR018612); BEST Arabidopsis thaliana protein match is: Coiled-coil domain-containing protein 55 (DUF2040) (TAIR:AT2G27280.1); Has 40028 Blast hits to 25465 proteins in 1773 species: Archae - 338; Bacteria - 5536; Metazoa - 16890; Fungi - 2992; Plants - 1451; Viruses - 173; Other Eukaryotes - 12648 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11675814..11678118 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128287.5 → NP_565644.1  nuclear speckle splicing regulatory-like protein (DUF2040) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565644.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VZR7, A0A654EWQ6, Q8S8I5
      Conserved Domains (2) summary
      PTZ00121
      Location:30 → 318
      PTZ00121; MAEBL; Provisional
      pfam09745
      Location:54 → 171
      DUF2040; Coiled-coil domain-containing protein 55 (DUF2040)
    Nucleotide Protein
    Heading Accession and Version

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