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    Leucine-rich repeat transmembrane protein kinase protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837077, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Leucine-rich repeat transmembrane protein kinase protein
    Primary source
    TAIR:AT1G05700
    Locus tag
    AT1G05700
    See related
    Araport:AT1G05700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3F20.15; F3F20_15
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (1709673..1713474)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Uridine diphosphate glycosyltransferase 74E2 Neighboring gene BTB and TAZ domain protein 3 Neighboring gene ncRNA Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Receptor kinase module targets PIN-dependent auxin transport during canalization. Hajný J, et al. Science, 2020 Oct 30. PMID 33122378, Free PMC Article
    2. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article
    3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Receptor kinase module targets PIN-dependent auxin transport during canalization.
      Title: Receptor kinase module targets PIN-dependent auxin transport during canalization.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within phosphorylation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Leucine-rich repeat transmembrane protein kinase protein
    NP_172061.2
    • Leucine-rich repeat transmembrane protein kinase protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase protein (TAIR:AT4G29990.1); Has 163331 Blast hits to 124125 proteins in 4749 species: Archae - 121; Bacteria - 14440; Metazoa - 44652; Fungi - 9862; Plants - 74464; Viruses - 498; Other Eukaryotes - 19294 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1709673..1713474
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100450.3 → NP_172061.2  Leucine-rich repeat transmembrane protein kinase protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172061.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0LGD6, Q9SYL1
      UniProtKB/TrEMBL
      A0A178WN66, A0A5S9ST83, A0A654E943
      Conserved Domains (4) summary
      PLN00113
      Location:358 → 493
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:411 → 434
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12819
      Location:34 → 353
      Malectin_like; Carbohydrate-binding protein of the ER
      cl21453
      Location:576 → 841
      PKc_like; Protein Kinases, catalytic domain

    2. NM_001331563.1 → NP_001321302.1  Leucine-rich repeat transmembrane protein kinase protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN66, A0A1P8AQG2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    C0LGD6.1

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