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    tRNA modification GTPase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844136, updated on 18-Sep-2024

    Summary

    Official Full Name
    tRNA modification GTPase
    Primary source
    TAIR:AT1G78010
    Locus tag
    AT1G78010
    See related
    Araport:AT1G78010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28K19.23; F28K19_23
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    Genomic context

    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (29333412..29336484)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene STAS domain / Sulfate transporter family Neighboring gene ncRNA Neighboring gene sulfate transporter 1;2 Neighboring gene senescence-associated family protein, putative (DUF581) Neighboring gene uncharacterized protein

    General gene information

    NM_106450.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in tRNA modification IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    tRNA modification GTPase
    NP_177924.3
    • tRNA modification GTPase, putative; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: small GTPase mediated signal transduction, tRNA modification; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), tRNA modification GTPase TrmE (InterPro:IPR004520), GTP-binding protein TrmE, N-terminal (InterPro:IPR018948), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT3G12080.1); Has 37224 Blast hits to 31482 proteins in 3092 species: Archae - 387; Bacteria - 27903; Metazoa - 467; Fungi - 287; Plants - 322; Viruses - 0; Other Eukaryotes - 7858 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29333412..29336484
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106450.4NP_177924.3  tRNA modification GTPase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177924.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WVF3, A0A654EPZ0, Q66GQ1
      Conserved Domains (1) summary
      PRK05291
      Location:88560
      trmE; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE