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    RPL4 ribosomal protein L4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837243, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RPL4
    Official Full Name
    ribosomal protein L4
    Primary source
    TAIR:AT1G07320
    Locus tag
    AT1G07320
    See related
    Araport:AT1G07320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EMB2784; EMBRYO DEFECTIVE 2784; F22G5.34; F22G5_34; plastid ribosomal protein L4; PRPL4; ribosomal protein L4; RIBOSOMAL PROTEIN L4
    Summary
    encodes a plastid ribosomal protein L4
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    Genomic context

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    See RPL4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (2248967..2250529)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene golgi nucleotide sugar transporter 2 Neighboring gene josephin protein-like protein Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein Neighboring gene dentin sialophosphoprotein Neighboring gene sugar transporter 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The nuclear RPL4 gene encodes a chloroplast protein that co-purifies with the T7-like transcription complex as well as plastid ribosomes. Trifa Y, et al. J Biol Chem, 1998 Feb 13. PMID 9461586
    2. Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana. Kakehi J, et al. PLoS One, 2015. PMID 25625317, Free PMC Article
    3. The function of RH22, a DEAD RNA helicase, in the biogenesis of the 50S ribosomal subunits of Arabidopsis chloroplasts. Chi W, et al. Plant Physiol, 2012 Feb. PMID 22170977, Free PMC Article
    4. Identification of proteins expressed at extremely low level in Arabidopsis leaves. Xu Y, et al. Biochem Biophys Res Commun, 2007 Jul 6. PMID 17511964
    5. Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction. Peltier JB, et al. Plant Cell, 2002 Jan. PMID 11826309, Free PMC Article

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001035908.2
    NM_001035909.1
    NM_100606.4
    NM_179273.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables poly(U) RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within translation TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma HDA PubMed 
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 
    located_in extracellular region HDA PubMed 
    located_in nucleus HDA PubMed 
    part_of plastid large ribosomal subunit TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plastid ribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in thylakoid HDA PubMed 

    General protein information

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    Preferred Names
    ribosomal protein L4
    NP_001030985.1
    • ribosomal protein L4 (RPL4); FUNCTIONS IN: structural constituent of ribosome, poly(U) RNA binding; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT2G20060.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001030986.1
    • ribosomal protein L4 (RPL4); FUNCTIONS IN: structural constituent of ribosome, poly(U) RNA binding; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT2G20060.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_563786.1
    • ribosomal protein L4 (RPL4); FUNCTIONS IN: structural constituent of ribosome, poly(U) RNA binding; INVOLVED IN: translation; LOCATED IN: in 10 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT2G20060.1); Has 8127 Blast hits to 8127 proteins in 2686 species: Archae - 3; Bacteria - 5615; Metazoa - 117; Fungi - 103; Plants - 95; Viruses - 0; Other Eukaryotes - 2194 (source: NCBI BLink).
    NP_849604.1
    • ribosomal protein L4 (RPL4); FUNCTIONS IN: structural constituent of ribosome, poly(U) RNA binding; INVOLVED IN: translation; LOCATED IN: in 9 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT2G20060.1); Has 8071 Blast hits to 8071 proteins in 2657 species: Archae - 3; Bacteria - 5559; Metazoa - 117; Fungi - 103; Plants - 95; Viruses - 0; Other Eukaryotes - 2194 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2248967..2250529
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100606.4 → NP_563786.1  ribosomal protein L4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563786.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O50061, Q8LF27, Q8VZS1, Q9LNV1
      UniProtKB/TrEMBL
      A0A178WQG5, A0A384KN11, A0A5S9T2G6, Q0WW46
      Conserved Domains (1) summary
      PRK05319
      Location:52 → 262
      rplD; 50S ribosomal protein L4; Provisional

    2. NM_179273.1 → NP_849604.1  ribosomal protein L4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849604.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9T2G6, Q3EDH2
      Conserved Domains (1) summary
      PRK05319
      Location:52 → 262
      rplD; 50S ribosomal protein L4; Provisional

    3. NM_001035909.1 → NP_001030986.1  ribosomal protein L4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030986.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WRI5, A0A5S9T2G6, Q2V4Q4
      Conserved Domains (1) summary
      PRK05319
      Location:52 → 262
      rplD; 50S ribosomal protein L4; Provisional

    4. NM_001035908.2 → NP_001030985.1  ribosomal protein L4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030985.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WRI5, A0A5S9T2G6, Q2V4Q4
      Conserved Domains (1) summary
      PRK05319
      Location:52 → 262
      rplD; 50S ribosomal protein L4; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O50061.2

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