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    ABCI7 non-intrinsic ABC protein 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840144, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ABCI7
    Official Full Name
    non-intrinsic ABC protein 6
    Primary source
    TAIR:AT1G32500
    Locus tag
    AT1G32500
    See related
    Araport:AT1G32500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATNAP6; ATP-binding cassette I7; F5D14.28; F5D14_28; NAP6; non-intrinsic ABC protein 6
    Summary
    Encodes a member of a heterogenous group of non-intrinsic ATP-binding cassette (ABC) proteins. Members of this group bear no close resemblance to each other nor to representatives of specific ABC protein subfamilies from other organisms. This grouping is arbitrary and will likely change upon acquisition of further data.
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    Genomic context

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    See ABCI7 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (11749798..11752190, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene isocitrate dehydrogenase IV Neighboring gene RNA helicase family protein Neighboring gene pseudo Neighboring gene NAC domain containing protein 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Unique genetic compartmentalization of the SUF system in cryptophytes and characterization of a SufD mutant in Arabidopsis thaliana. Hjorth E, et al. FEBS Lett, 2005 Feb 14. PMID 15710401
    2. AtNAP7 is a plastidic SufC-like ATP-binding cassette/ATPase essential for Arabidopsis embryogenesis. Xu XM, et al. Proc Natl Acad Sci U S A, 2004 Jun 15. PMID 15184673, Free PMC Article
    3. The Arabidopsis thaliana ABC protein superfamily, a complete inventory. Sánchez-Fernández R, et al. J Biol Chem, 2001 Aug 10. PMID 11346655
    4. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_102985.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within iron-sulfur cluster assembly IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within thylakoid membrane organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma HDA PubMed 
    located_in plastid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    non-intrinsic ABC protein 6
    NP_564404.1
    • non-intrinsic ABC protein 6 (NAP6); CONTAINS InterPro DOMAIN/s: SUF system FeS cluster assembly, SufBD (InterPro:IPR000825); BEST Arabidopsis thaliana protein match is: ATP binding cassette protein 1 (TAIR:AT4G04770.1); Has 9763 Blast hits to 9763 proteins in 1806 species: Archae - 246; Bacteria - 6215; Metazoa - 1; Fungi - 6; Plants - 107; Viruses - 0; Other Eukaryotes - 3188 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      11749798..11752190 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102985.4 → NP_564404.1  non-intrinsic ABC protein 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564404.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LCI4, Q9LQK7
      UniProtKB/TrEMBL
      A0A178WFX7, A0A384LFE4, A0A5S9WN02, Q058Q9
      Conserved Domains (1) summary
      pfam01458
      Location:223 → 450
      UPF0051; Uncharacterized protein family (UPF0051)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LQK7.1

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