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    Vacuolar protein sorting 55 (VPS55) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840134, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Vacuolar protein sorting 55 (VPS55) family protein
    Primary source
    TAIR:AT1G32410
    Locus tag
    AT1G32410
    See related
    Araport:AT1G32410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5D14.32
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (11693799..11695575)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene tobamovirus multiplication 2A Neighboring gene pentatricopeptide (PPR) repeat-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084174.1
    NM_001084175.1
    NM_001084176.1
    NM_102975.1
    NM_179410.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Vacuolar protein sorting 55 (VPS55) family protein
    NP_001077643.1
    • Vacuolar protein sorting 55 (VPS55) family protein; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: Vacuolar protein sorting 55 (VPS55) family protein (TAIR:AT3G11530.2); Has 430 Blast hits to 430 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 181; Fungi - 137; Plants - 85; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
    NP_001077644.1
    • Vacuolar protein sorting 55 (VPS55) family protein; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: Vacuolar protein sorting 55 (VPS55) family protein (TAIR:AT3G11530.2); Has 430 Blast hits to 430 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 181; Fungi - 137; Plants - 85; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
    NP_001077645.1
    • Vacuolar protein sorting 55 (VPS55) family protein; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: Vacuolar protein sorting 55 (VPS55) family protein (TAIR:AT3G11530.2); Has 430 Blast hits to 430 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 181; Fungi - 137; Plants - 85; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
    NP_564400.1
    • Vacuolar protein sorting 55 (VPS55) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: Vacuolar protein sorting 55 (VPS55) family protein (TAIR:AT3G11530.2); Has 430 Blast hits to 430 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 181; Fungi - 137; Plants - 85; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
    NP_849741.1
    • Vacuolar protein sorting 55 (VPS55) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: Vacuolar protein sorting 55 (VPS55) family protein (TAIR:AT3G11530.2); Has 430 Blast hits to 430 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 181; Fungi - 137; Plants - 85; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      11693799..11695575
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179410.4 → NP_849741.1  Vacuolar protein sorting 55 (VPS55) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849741.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LCQ6, Q9AST6
      UniProtKB/TrEMBL
      A0A178W1S9, A0A654EFI2, A0A7G2DYT2
      Conserved Domains (1) summary
      pfam04133
      Location:17 → 134
      Vps55; Vacuolar protein sorting 55

    2. NM_001084174.1 → NP_001077643.1  Vacuolar protein sorting 55 (VPS55) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077643.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LCQ6, Q9AST6
      UniProtKB/TrEMBL
      A0A178W1S9, A0A654EFI2, A0A7G2DYT2
      Conserved Domains (1) summary
      pfam04133
      Location:17 → 134
      Vps55; Vacuolar protein sorting 55

    3. NM_001084176.1 → NP_001077645.1  Vacuolar protein sorting 55 (VPS55) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077645.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LCQ6, Q9AST6
      UniProtKB/TrEMBL
      A0A178W1S9, A0A654EFI2, A0A7G2DYT2
      Conserved Domains (1) summary
      pfam04133
      Location:17 → 134
      Vps55; Vacuolar protein sorting 55

    4. NM_102975.1 → NP_564400.1  Vacuolar protein sorting 55 (VPS55) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564400.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LCQ6, Q9AST6
      UniProtKB/TrEMBL
      A0A178W1S9, A0A654EFI2, A0A7G2DYT2
      Conserved Domains (1) summary
      pfam04133
      Location:17 → 134
      Vps55; Vacuolar protein sorting 55

    5. NM_001084175.1 → NP_001077644.1  Vacuolar protein sorting 55 (VPS55) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077644.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LCQ6, Q9AST6
      UniProtKB/TrEMBL
      A0A178W1S9, A0A654EFI2, A0A7G2DYT2
      Conserved Domains (1) summary
      pfam04133
      Location:17 → 134
      Vps55; Vacuolar protein sorting 55
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9AST6.1

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