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    Restriction endonuclease, type II-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837942, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Restriction endonuclease, type II-like superfamily protein
    Primary source
    TAIR:AT1G13810
    Locus tag
    AT1G13810
    See related
    Araport:AT1G13810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16A14.30; F16A14_30
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (4733991..4735453)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene XH/XS domain-containing protein Neighboring gene uncharacterized protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_101249.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Restriction endonuclease, type II-like superfamily protein
    NP_172836.1
    • Restriction endonuclease, type II-like superfamily protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: YqaJ viral recombinase family (InterPro:IPR019080), Exonuclease, phage-type/RecB, C-terminal (InterPro:IPR011604), Restriction endonuclease, type II-like (InterPro:IPR011335); BEST Arabidopsis thaliana protein match is: Restriction endonuclease, type II-like superfamily protein (TAIR:AT1G67660.1); Has 316 Blast hits to 315 proteins in 62 species: Archae - 0; Bacteria - 48; Metazoa - 55; Fungi - 0; Plants - 63; Viruses - 14; Other Eukaryotes - 136 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4733991..4735453
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101249.3 → NP_172836.1  Restriction endonuclease, type II-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172836.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W7K8, Q5XVK9
      Conserved Domains (1) summary
      cd22343
      Location:57 → 241
      PDDEXK_lambda_exonuclease-like; Uncharacterized nucleases similar to lambda phage exonuclease
    Nucleotide Protein
    Heading Accession and Version

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