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    integrator complex subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819942, updated on 18-Sep-2024

    Summary

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    Official Full Name
    integrator complex subunit
    Primary source
    TAIR:AT3G07530
    Locus tag
    AT3G07530
    See related
    Araport:AT3G07530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (2400534..2404499)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene glutamate receptor 1.4 Neighboring gene uncharacterized protein Neighboring gene autophagocytosis-associated family protein Neighboring gene Actin-binding FH2 (formin homology 2) family protein Neighboring gene RNI-like superfamily protein Neighboring gene peroxin 13 Neighboring gene histone H2A deubiquitinase (DUF3755) Neighboring gene fanconi anemia group D2 protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001337719.1
    NM_001337720.1
    NM_111631.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in snRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of integrator complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    integrator complex subunit
    NP_187409.2
    • CONTAINS InterPro DOMAIN/s: Beta-Casp domain (InterPro:IPR022712); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73 kDa subunit-II (TAIR:AT2G01730.1); Has 624 Blast hits to 615 proteins in 160 species: Archae - 54; Bacteria - 6; Metazoa - 333; Fungi - 44; Plants - 93; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2400534..2404499
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337717.1 → NP_001325703.1  integrator complex subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LM20, A0A5S9XA05, A0A654F507
      Conserved Domains (2) summary
      smart01027
      Location:374 → 474
      Beta-Casp; Beta-Casp domain
      cl23716
      Location:101 → 280
      metallo-hydrolase-like_MBL-fold; mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain

    2. NM_001337718.1 → NP_001325706.1  integrator complex subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LM23, A0A654F507, A0A7G2EGM8
      Conserved Domains (2) summary
      smart01027
      Location:375 → 475
      Beta-Casp; Beta-Casp domain
      cl23716
      Location:101 → 280
      metallo-hydrolase-like_MBL-fold; mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain

    3. NM_111631.3 → NP_187409.2  integrator complex subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187409.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F507, F4JEH2
      Conserved Domains (2) summary
      smart01027
      Location:374 → 478
      Beta-Casp; Beta-Casp domain
      cl23716
      Location:101 → 280
      metallo-hydrolase-like_MBL-fold; mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain

    4. NM_001337719.1 → NP_001325705.1  integrator complex subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LM22, A0A654F507

    5. NM_001337720.1 → NP_001325704.1  integrator complex subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VBQ3, A0A1I9LM21
    Nucleotide Protein
    Heading Accession and Version

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