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    SAMDC S-adenosylmethionine decarboxylase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821214, updated on 18-Sep-2024

    Summary

    Official Symbol
    SAMDC
    Official Full Name
    S-adenosylmethionine decarboxylase
    Primary source
    TAIR:AT3G02470
    Locus tag
    AT3G02470
    See related
    Araport:AT3G02470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ADOMETDC; F16B3.10; F16B3_10; S-adenosylmethionine decarboxylase; S-ADENOSYLMETHIONINE DECARBOXYLASE
    Summary
    Encodes a S-adenosylmethionine decarboxylase involved in polyamine biosynthesis.
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    Genomic context

    See SAMDC in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (508886..511561)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene cell division protein ftsH Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein Neighboring gene Late embryogenesis abundant protein (LEA) family protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Miscellaneous features

    • Loc: 509815-509952 AT3G02470.uORF1-1
    • Loc: 510048-510068 AT3G02470.uORF1-2
    NM_001084624.1
    NM_001161113.1
    NM_111114.2

    General protein information

    Preferred Names
    S-adenosylmethionine decarboxylase
    NP_001078093.1
    • S-adenosylmethionine decarboxylase (SAMDC); CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: Adenosylmethionine decarboxylase family protein (TAIR:AT5G15950.2); Has 1026 Blast hits to 1010 proteins in 271 species: Archae - 0; Bacteria - 57; Metazoa - 220; Fungi - 150; Plants - 531; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
    NP_001154585.1
    • S-adenosylmethionine decarboxylase; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: Adenosylmethionine decarboxylase family protein (TAIR:AT5G15950.2); Has 1026 Blast hits to 1010 proteins in 271 species: Archae - 0; Bacteria - 57; Metazoa - 220; Fungi - 150; Plants - 531; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
    NP_186896.1
    • S-adenosylmethionine decarboxylase (SAMDC); CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: Adenosylmethionine decarboxylase family protein (TAIR:AT5G15950.2); Has 1026 Blast hits to 1010 proteins in 271 species: Archae - 0; Bacteria - 57; Metazoa - 220; Fungi - 150; Plants - 531; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      508886..511561
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001161113.1NP_001154585.1  S-adenosylmethionine decarboxylase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154585.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DFT1, Q96286, Q96531, Q9M893
      UniProtKB/TrEMBL
      A0A178VEW3, A0A5S9X8G2, Q940Q5
      Conserved Domains (1) summary
      PLN02524
      Location:1358
      PLN02524; S-adenosylmethionine decarboxylase
    2. NM_001084624.1NP_001078093.1  S-adenosylmethionine decarboxylase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078093.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DFT1, Q96286, Q96531, Q9M893
      UniProtKB/TrEMBL
      A0A178VEW3, A0A5S9X8G2, Q940Q5
      Conserved Domains (1) summary
      PLN02524
      Location:1358
      PLN02524; S-adenosylmethionine decarboxylase
    3. NM_111114.2NP_186896.1  S-adenosylmethionine decarboxylase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186896.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DFT1, Q96286, Q96531, Q9M893
      UniProtKB/TrEMBL
      A0A178VEW3, A0A5S9X8G2, Q940Q5
      Conserved Domains (1) summary
      PLN02524
      Location:1358
      PLN02524; S-adenosylmethionine decarboxylase