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    RNA recognition motif (RRM)-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821973, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA recognition motif (RRM)-containing protein
    Primary source
    TAIR:AT3G23900
    Locus tag
    AT3G23900
    See related
    Araport:AT3G23900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (8631482..8636066, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene topoisomerase II Neighboring gene reverse transcriptase-like protein Neighboring gene beta-amylase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dynamic regulation of Pep-induced immunity through post-translational control of defence transcript splicing. Dressano K, et al. Nat Plants, 2020 Aug. PMID 32690890, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001035676.1
    NM_001203029.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to peptide IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA recognition motif (RRM)-containing protein
    NP_001030753.1
    • RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Filamin/ABP280 repeat (InterPro:IPR001298), Immunoglobulin E-set (InterPro:IPR014756), Filamin/ABP280 repeat-like (InterPro:IPR017868), Immunoglobulin-like fold (InterPro:IPR013783), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001189958.1
    • RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Filamin/ABP280 repeat (InterPro:IPR001298), Immunoglobulin-like fold (InterPro:IPR013783), RNA recognition motif, RNP-1 (InterPro:IPR000504), Immunoglobulin E-set (InterPro:IPR014756), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Filamin/ABP280 repeat-like (InterPro:IPR017868); BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT3G24255.1).
    NP_189032.2
    • RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Filamin/ABP280 repeat (InterPro:IPR001298), Immunoglobulin E-set (InterPro:IPR014756), Filamin/ABP280 repeat-like (InterPro:IPR017868), RNA recognition motif, RNP-1 (InterPro:IPR000504), Immunoglobulin-like fold (InterPro:IPR013783), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT3G24255.1); Has 108738 Blast hits to 50207 proteins in 2086 species: Archae - 86; Bacteria - 8977; Metazoa - 55837; Fungi - 11723; Plants - 7259; Viruses - 753; Other Eukaryotes - 24103 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8631482..8636066 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113295.3 → NP_189032.2  RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189032.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V6Z8, A0A654FFH9, F4J5A7
      Conserved Domains (3) summary
      smart00557
      Location:91 → 193
      IG_FLMN; Filamin-type immunoglobulin domains
      cd00590
      Location:353 → 418
      RRM_SF; RNA recognition motif (RRM) superfamily
      pfam00630
      Location:88 → 186
      Filamin; Filamin/ABP280 repeat

    2. NM_001338662.1 → NP_001325936.1  RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V6Z8, A0A654FFH9, F4J5A7

    3. NM_001203029.1 → NP_001189958.1  RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189958.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V6Z8, A0A654FFH9, F4J5A7
      Conserved Domains (3) summary
      smart00557
      Location:91 → 193
      IG_FLMN; Filamin-type immunoglobulin domains
      cd00590
      Location:353 → 418
      RRM_SF; RNA recognition motif (RRM) superfamily
      pfam00630
      Location:88 → 186
      Filamin; Filamin/ABP280 repeat

    4. NM_001035676.1 → NP_001030753.1  RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030753.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V6Z8, F4J5A9
      Conserved Domains (3) summary
      smart00557
      Location:91 → 193
      IG_FLMN; Filamin-type immunoglobulin domains
      cd00590
      Location:353 → 418
      RRM_SF; RNA recognition motif (RRM) superfamily
      pfam00630
      Location:88 → 186
      Filamin; Filamin/ABP280 repeat
    Nucleotide Protein
    Heading Accession and Version

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