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    AtLEA4-1 Late embryogenesis abundant protein, group 1 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840150, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AtLEA4-1
    Official Full Name
    Late embryogenesis abundant protein, group 1 protein
    Primary source
    TAIR:AT1G32560
    Locus tag
    AT1G32560
    See related
    Araport:AT1G32560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    Late Embryogenesis Abundant 4-1; LEA4-1; T9G5.2; T9G5_2
    Summary
    Encodes LEA4-1, a member of the Late Embryogenesis Abundant (LEA) proteins which typically accumulate in response to low water availability conditions imposed during development or by the environment.
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    Genomic context

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    See AtLEA4-1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (11774484..11775442)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene lsd one like 1 Neighboring gene 2Fe-2S ferredoxin-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional analysis of the group 4 late embryogenesis abundant proteins reveals their relevance in the adaptive response during water deficit in Arabidopsis. Olvera-Carrillo Y, et al. Plant Physiol, 2010 Sep. PMID 20668063, Free PMC Article
    2. The ubiquitous distribution of late embryogenesis abundant proteins across cell compartments in Arabidopsis offers tailored protection against abiotic stress. Candat A, et al. Plant Cell, 2014 Jul. PMID 25005920, Free PMC Article
    3. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_102991.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in embryo development ending in seed dormancy IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to osmotic stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to water deprivation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within seed development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    Late embryogenesis abundant protein, group 1 protein
    NP_174534.1
    • Late embryogenesis abundant protein, group 1 protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 1 (InterPro:IPR005513); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein, group 1 protein (TAIR:AT2G35300.1); Has 218 Blast hits to 218 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      11774484..11775442
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102991.4 → NP_174534.1  Late embryogenesis abundant protein, group 1 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174534.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q39138, Q42167
      UniProtKB/TrEMBL
      A0A178WA15
      Conserved Domains (1) summary
      pfam03760
      Location:1 → 71
      LEA_1; Late embryogenesis abundant (LEA) group 1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q39138.1

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