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    Copia-like polyprotein/retrotransposon [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840305, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Copia-like polyprotein/retrotransposon
    Primary source
    TAIR:AT1G34070
    Locus tag
    AT1G34070
    See related
    Araport:AT1G34070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12G12.10; F12G12_10
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (12402283..12403209)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Neighboring gene S-adenosylmethionine carrier 2 Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Copia-like polyprotein/retrotransposon
    NP_174669.1
    • CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      12402283..12403209
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103130.1 → NP_174669.1  Copia-like polyprotein/retrotransposon [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174669.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9FX16
      Conserved Domains (2) summary
      pfam14223
      Location:93 → 201
      UBN2; gag-polypeptide of LTR copia-type
      pfam14244
      Location:14 → 153
      UBN2_3; gag-polypeptide of LTR copia-type
    Nucleotide Protein
    Heading Accession and Version

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