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    GH9B5 glycosyl hydrolase 9B5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838583, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GH9B5
    Official Full Name
    glycosyl hydrolase 9B5
    Primary source
    TAIR:AT1G19940
    Locus tag
    AT1G19940
    See related
    Araport:AT1G19940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtGH9B5; F6F9.1; F6F9_1; glycosyl hydrolase 9B5
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    Genomic context

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    See GH9B5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (6918159..6921979, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ATPase, F0/V0 complex, subunit C protein Neighboring gene Pseudouridine synthase/archaeosine transglycosylase-like family protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene HVA22-like protein H (ATHVA22H) Neighboring gene transcription factor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001332419.1
    NM_001332420.1
    NM_101849.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cellulase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    glycosyl hydrolase 9B5
    NP_173423.1
    • glycosyl hydrolase 9B5 (GH9B5); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B7 (TAIR:AT1G75680.1); Has 1847 Blast hits to 1835 proteins in 264 species: Archae - 2; Bacteria - 685; Metazoa - 182; Fungi - 17; Plants - 919; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6918159..6921979 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101849.2 → NP_173423.1  glycosyl hydrolase 9B5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173423.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FXI9, Q9LNS3
      UniProtKB/TrEMBL
      A0A178WBF8
      Conserved Domains (1) summary
      PLN02345
      Location:52 → 500
      PLN02345; endoglucanase

    2. NM_001332419.1 → NP_001321680.1  glycosyl hydrolase 9B5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FXI9, Q9LNS3
      UniProtKB/TrEMBL
      A0A178WBF8

    3. NM_001332420.1 → NP_001321679.1  glycosyl hydrolase 9B5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ARN0
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FXI9.1

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