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    PIRL8 plant intracellular ras group-related LRR 8 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828711, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PIRL8
    Official Full Name
    plant intracellular ras group-related LRR 8
    Primary source
    TAIR:AT4G26050
    Locus tag
    AT4G26050
    See related
    Araport:AT4G26050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20B18.160; F20B18_160; plant intracellular ras group-related LRR 8
    Summary
    Encodes PIRL8, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.
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    Genomic context

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    See PIRL8 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (13210230..13213477)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene C2H2-like zinc finger protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Ribosomal protein L18ae family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CFM6 is an Essential CRM Protein Required for the Splicing of nad5 Transcript in Arabidopsis Mitochondria. Lin WC, et al. Plant Cell Physiol, 2022 Feb 15. PMID 34752612
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_118738.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA cis splicing, via spliceosome IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    plant intracellular ras group-related LRR 8
    NP_194335.2
    • plant intracellular ras group-related LRR 8 (PIRL8); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 6 (TAIR:AT2G19330.1); Has 73298 Blast hits to 32440 proteins in 1234 species: Archae - 33; Bacteria - 7555; Metazoa - 32830; Fungi - 2348; Plants - 26304; Viruses - 23; Other Eukaryotes - 4205 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13210230..13213477
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118738.6 → NP_194335.2  plant intracellular ras group-related LRR 8 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194335.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RWE5, Q9SZH9
      UniProtKB/TrEMBL
      A0A5S9XVY3, A0A654FSW6
      Conserved Domains (2) summary
      PRK15370
      Location:81 → 308
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      sd00033
      Location:84 → 105
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RWE5.1

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