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    RPM1-interacting protein 4 (RIN4) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824004, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RPM1-interacting protein 4 (RIN4) family protein
    Primary source
    TAIR:AT3G48450
    Locus tag
    AT3G48450
    See related
    Araport:AT3G48450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (17943933..17945138, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene relative of early flowering 6 Neighboring gene Zinc finger C-x8-C-x5-C-x3-H type family protein Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene embryo defective 2423 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001339370.1
    NM_114704.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RPM1-interacting protein 4 (RIN4) family protein
    NP_566905.1
    • RPM1-interacting protein 4 (RIN4) family protein; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: RPM1-interacting protein 4 (RIN4) family protein (TAIR:AT5G63270.1); Has 297 Blast hits to 296 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 295; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      17943933..17945138 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114704.4 → NP_566905.1  RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566905.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V854, A0A654FIB0, Q8LCF4
      Conserved Domains (1) summary
      pfam05627
      Location:5 → 40
      AvrRpt-cleavage; Cleavage site for pathogenic type III effector avirulence factor Avr

    2. NM_001339370.1 → NP_001325747.1  RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V854, A0A654FIB0, Q8LCF4
      Conserved Domains (1) summary
      pfam05627
      Location:5 → 40
      AvrRpt-cleavage; Cleavage site for pathogenic type III effector avirulence factor Avr
    Nucleotide Protein
    Heading Accession and Version

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