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    chx28 cation/hydrogen exchanger 28 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824371, updated on 18-Sep-2024

    Summary

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    Official Symbol
    chx28
    Official Full Name
    cation/hydrogen exchanger 28
    Primary source
    TAIR:AT3G52080
    Locus tag
    AT3G52080
    See related
    Araport:AT3G52080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    cation/hydrogen exchanger 28
    Summary
    encodes a cation:proton exchanger expressed in pollen
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    Genomic context

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    See chx28 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (19314966..19317988)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein Neighboring gene ncRNA Neighboring gene RNA/RNP complex-1-interacting phosphatase Neighboring gene uncharacterized protein Neighboring gene DNA-directed RNA polymerase, RBP11-like protein Neighboring gene RING/FYVE/PHD-type zinc finger family protein Neighboring gene DIS3-exonuclease-like protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_115067.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    cation/hydrogen exchanger 28
    NP_190776.2
    • cation/hydrogen exchanger 28 (chx28); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, flower, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/hydrogen exchanger 15 (TAIR:AT2G13620.1); Has 2845 Blast hits to 2827 proteins in 865 species: Archae - 172; Bacteria - 1868; Metazoa - 0; Fungi - 124; Plants - 540; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19314966..19317988
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115067.3 → NP_190776.2  cation/hydrogen exchanger 28 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190776.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L709, Q9SUZ6
      UniProtKB/TrEMBL
      A0A178VCN7, A0A5S9XK27, A0A654FGS7
      Conserved Domains (1) summary
      PLN03159
      Location:25 → 784
      PLN03159; cation/H(+) antiporter 15; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L709.2

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