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    IMPA-9 importin alpha isoform 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831675, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IMPA-9
    Official Full Name
    importin alpha isoform 9
    Primary source
    TAIR:AT5G03070
    Locus tag
    AT5G03070
    See related
    Araport:AT5G03070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15A17.100; F15A17_100; importin alpha isoform 9
    Summary
    Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.
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    Genomic context

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    See IMPA-9 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (718136..721559, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene knotted 1-binding protein Neighboring gene striatin-like protein Neighboring gene Phosphatidic acid phosphatase (PAP2) family protein Neighboring gene Mto 1 responding down protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_120385.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nuclear import signal receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    importin alpha isoform 9
    NP_195927.2
    • importin alpha isoform 9 (IMPA-9); FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin alpha isoform 6 (TAIR:AT1G02690.2); Has 2139 Blast hits to 1862 proteins in 255 species: Archae - 0; Bacteria - 2; Metazoa - 1001; Fungi - 275; Plants - 485; Viruses - 0; Other Eukaryotes - 376 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      718136..721559 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120385.4 → NP_195927.2  importin alpha isoform 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195927.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4KF65, Q9LYX8
      UniProtKB/TrEMBL
      A0A5S9Y166, A0A654FY90
      Conserved Domains (4) summary
      COG5064
      Location:24 → 519
      SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
      cd00020
      Location:120 → 238
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      pfam16186
      Location:478 → 519
      Arm_3; Atypical Arm repeat
      sd00043
      Location:121 → 154
      ARM; armadillo repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4KF65.1

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