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    ILP1 GC-rich sequence DNA-binding factor-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830755, updated on 24-Sep-2024

    Summary

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    Official Symbol
    ILP1
    Official Full Name
    GC-rich sequence DNA-binding factor-like protein
    Primary source
    TAIR:AT5G08550
    Locus tag
    AT5G08550
    See related
    Araport:AT5G08550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    increased level of polyploidy1-1D; MAH20.11; MAH20_11
    Summary
    Encodes a transcriptional repressor that is homologous to the C-terminal region of mammalian GC binding factor. It regulates endoreduplication through control of CYC2A expression.
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    Genomic context

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    See ILP1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (2765642..2770282, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene 51 kDa subunit of complex I Neighboring gene D111/G-patch domain-containing protein Neighboring gene ribosomal RNA small subunit methyltransferase J Neighboring gene ncRNA Neighboring gene transducin family protein / WD-40 repeat family protein Neighboring gene Transcription initiation Spt4-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ILP1 and NTR1 affect the stability of U6 snRNA during spliceosome complex disassembly in Arabidopsis. Wu J, et al. Plant Sci, 2024 Oct. PMID 39038708
    2. Spliceosome disassembly factors ILP1 and NTR1 promote miRNA biogenesis in Arabidopsis thaliana. Wang J, et al. Nucleic Acids Res, 2019 Sep 5. PMID 31216029, Free PMC Article
    3. NTR1 is required for transcription elongation checkpoints at alternative exons in Arabidopsis. Dolata J, et al. EMBO J, 2015 Feb 12. PMID 25568310, Free PMC Article
    4. Increased level of polyploidy1, a conserved repressor of CYCLINA2 transcription, controls endoreduplication in Arabidopsis. Yoshizumi T, et al. Plant Cell, 2006 Oct. PMID 17012601, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ILP1 and NTR1 affect the stability of U6 snRNA during spliceosome complex disassembly in Arabidopsis.
      Title: ILP1 and NTR1 affect the stability of U6 snRNA during spliceosome complex disassembly in Arabidopsis.
    2. Spliceosome disassembly factors ILP1 and NTR1 promote miRNA biogenesis in Arabidopsis thaliana.
      Title: Spliceosome disassembly factors ILP1 and NTR1 promote miRNA biogenesis in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    NM_120941.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables translation repressor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA endoreduplication IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within mRNA splicing, via spliceosome IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within negative regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GC-rich sequence DNA-binding factor-like protein
    NP_196472.1
    • increased level of polyploidy1-1D (ILP1); CONTAINS InterPro DOMAIN/s: GC-rich sequence DNA-binding factor-like (InterPro:IPR012890); BEST Arabidopsis thaliana protein match is: GC-rich sequence DNA-binding factor-like protein (TAIR:AT5G09210.1); Has 786 Blast hits to 745 proteins in 186 species: Archae - 2; Bacteria - 46; Metazoa - 439; Fungi - 95; Plants - 69; Viruses - 1; Other Eukaryotes - 134 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2765642..2770282 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120941.2 → NP_196472.1  GC-rich sequence DNA-binding factor-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196472.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FNN3
      UniProtKB/TrEMBL
      A0A178UKR0, A0A5S9Y2K0, A0A7G2F812
      Conserved Domains (1) summary
      pfam07842
      Location:598 → 803
      GCFC; GC-rich sequence DNA-binding factor-like protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FNN3.1

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