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    RING/U-box superfamily protein with ARM repeat domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834011, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RING/U-box superfamily protein with ARM repeat domain-containing protein
    Primary source
    TAIR:AT5G40140
    Locus tag
    AT5G40140
    See related
    Araport:AT5G40140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MSN9.4; MSN9_4
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (16057079..16059303)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene AGAMOUS-like 76 Neighboring gene miscRNA Neighboring gene Peroxidase superfamily protein Neighboring gene peroxidase Neighboring gene Defensin-like (DEFL) family protein Neighboring gene Ankyrin repeat family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plant U-Box40 Mediates Degradation of the Brassinosteroid-Responsive Transcription Factor BZR1 in Arabidopsis Roots. Kim EJ, et al. Plant Cell, 2019 Apr. PMID 30814258, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_123377.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box superfamily protein with ARM repeat domain-containing protein
    NP_198830.1
    • RING/U-box superfamily protein with ARM repeat domain; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex, chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 38 (TAIR:AT5G65200.1); Has 3757 Blast hits to 2892 proteins in 207 species: Archae - 0; Bacteria - 10; Metazoa - 408; Fungi - 448; Plants - 2529; Viruses - 0; Other Eukaryotes - 362 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      16057079..16059303
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123377.2 → NP_198830.1  RING/U-box superfamily protein with ARM repeat domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198830.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FL17
      UniProtKB/TrEMBL
      A0A178UJN0, A0A5S9Y9H8, A0A654G7K7
      Conserved Domains (4) summary
      PLN03200
      Location:238 → 463
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:272 → 297
      ARM; armadillo repeat [structural motif]
      cd16453
      Location:64 → 106
      RING-Ubox; U-box domain, a modified RING finger [structural motif]
      cl17238
      Location:61 → 120
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FL17.2

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