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    RL2 Root hair defective 3 GTP-binding protein (RHD3) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834552, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RL2
    Official Full Name
    Root hair defective 3 GTP-binding protein (RHD3)
    Primary source
    TAIR:AT5G45160
    Locus tag
    AT5G45160
    See related
    Araport:AT5G45160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K18C1.4; K18C1_4; RHD-like2
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    Genomic context

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    See RL2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    23
    Sequence:
    Chromosome: 5; NC_003076.8 (18264616..18270296)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene nuclear RNA polymerase C2 Neighboring gene RNAse THREE-like protein 3 Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene Flavin-binding monooxygenase family protein Neighboring gene Cyclin family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An Arabidopsis reticulon and the atlastin homologue RHD3-like2 act together in shaping the tubular endoplasmic reticulum. Lee H, et al. New Phytol, 2013 Jan. PMID 23163512
    2. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NM_123884.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in endoplasmic reticulum HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Root hair defective 3 GTP-binding protein (RHD3)
    NP_199329.1
    • Root hair defective 3 GTP-binding protein (RHD3); FUNCTIONS IN: GTP binding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Root hair defective 3 GTP-binding (InterPro:IPR008803); BEST Arabidopsis thaliana protein match is: Root hair defective 3 GTP-binding protein (RHD3) (TAIR:AT3G13870.1); Has 535 Blast hits to 521 proteins in 188 species: Archae - 0; Bacteria - 2; Metazoa - 73; Fungi - 186; Plants - 129; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      18264616..18270296
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123884.4 → NP_199329.1  Root hair defective 3 GTP-binding protein (RHD3) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199329.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FKE9
      UniProtKB/TrEMBL
      A0A178ULP7
      Conserved Domains (1) summary
      pfam05879
      Location:46 → 791
      RHD3; Root hair defective 3 GTP-binding protein (RHD3)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FKE9.1

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