U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    DNA repair protein RadA-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835101, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    DNA repair protein RadA-like protein
    Primary source
    TAIR:AT5G50340
    Locus tag
    AT5G50340
    See related
    Araport:AT5G50340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MXI22.5; MXI22_5
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5
    Exon count:
    17
    Sequence:
    Chromosome: 5; NC_003076.8 (20491393..20496589, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene uncharacterized protein Neighboring gene maternally expressed family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001344887.1
    NM_001344888.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP-dependent DNA damage sensor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables damaged DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    DNA repair protein RadA-like protein
    NP_001318773.1
    • ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases; FUNCTIONS IN: in 7 functions; INVOLVED IN: DNA repair, proteolysis, DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, Lon C-terminal (InterPro:IPR008269), ATPase, AAA+ type, core (InterPro:IPR003593), DNA repair protein RadA (InterPro:IPR004504), DNA helicase, DnaB-like, C-terminal (InterPro:IPR007694), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); Has 8098 Blast hits to 8084 proteins in 2420 species: Archae - 172; Bacteria - 6133; Metazoa - 8; Fungi - 0; Plants - 82; Viruses - 9; Other Eukaryotes - 1694 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20491393..20496589 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124415.5 → NP_199845.3  DNA repair protein RadA-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199845.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G9M8, Q0WVW9
      Conserved Domains (3) summary
      PRK11823
      Location:104 → 587
      PRK11823; DNA repair protein RadA; Provisional
      cd01121
      Location:109 → 508
      Sms; Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of ...
      cl21678
      Location:498 → 555
      ChlI; Subunit ChlI of Mg-chelatase

    2. NM_001344887.1 → NP_001318773.1  DNA repair protein RadA-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UC10, F4K8X8

    3. NM_001344888.1 → NP_001332610.1  DNA repair protein RadA-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UC10, F4K8X8
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.