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    DNA-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836104, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA-binding protein
    Primary source
    TAIR:AT5G59830
    Locus tag
    AT5G59830
    See related
    Araport:AT5G59830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MMN10.5; MMN10_5
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (24105041..24107241)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Subtilase family protein Neighboring gene C2H2-type zinc finger family protein Neighboring gene Ras-related small GTP-binding family protein Neighboring gene ncRNA Neighboring gene Gibberellin-regulated family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of a Putative DNA-Binding Protein in Arabidopsis That Acts as a Susceptibility Hub and Interacts With Multiple Pseudomonas syringae Effectors. Schreiber KJ, et al. Mol Plant Microbe Interact, 2021 Apr. PMID 33373263
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001345372.1
    NM_125375.5
    NM_203235.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA topoisomerase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to bacterium IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA-binding protein
    NP_001318842.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13660.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_200791.2
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13660.2); Has 174 Blast hits to 139 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 172; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24105041..24107241
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125375.5 → NP_200791.2  DNA-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200791.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U8H6, A0A384LG85, F4JXC7, Q0WPK6
      Conserved Domains (1) summary
      pfam16135
      Location:320 → 375
      Jas; TPL-binding domain in jasmonate signalling

    2. NM_001345372.1 → NP_001318842.1  DNA-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U8H6, A0A384LG85, F4JXC7, Q0WPK6
      Conserved Domains (1) summary
      pfam16135
      Location:320 → 375
      Jas; TPL-binding domain in jasmonate signalling

    3. NM_203235.2 → NP_974964.1  DNA-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974964.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U8H6, A0A384LG85, F4JXC7, Q0WPK6
      Conserved Domains (1) summary
      pfam16135
      Location:320 → 375
      Jas; TPL-binding domain in jasmonate signalling
    Nucleotide Protein
    Heading Accession and Version

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