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    ARM repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836869, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ARM repeat superfamily protein
    Primary source
    TAIR:AT5G67340
    Locus tag
    AT5G67340
    See related
    Araport:AT5G67340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K8K14.6; K8K14_6
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (26864395..26867847)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene WD-40 repeat family protein Neighboring gene natural resistance associated macrophage protein 4 Neighboring gene uncharacterized protein Neighboring gene Subtilase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Exploring the role of a stigma-expressed plant U-box gene in the pollination responses of transgenic self-incompatible Arabidopsis thaliana. Zhang J, et al. Plant Reprod, 2014 Jun. PMID 24573467
    2. EXTRA-LARGE G PROTEINs Interact with E3 Ligases PUB4 and PUB2 and Function in Cytokinin and Developmental Processes. Wang Y, et al. Plant Physiol, 2017 Feb. PMID 27986866, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. PUB2 role in the cytokinin signaling networks regulating developmental and physiological processes.PUB2 interaction with XLG1, XLG2 and XlG3 proteins.
      Title: EXTRA-LARGE G PROTEINs Interact with E3 Ligases PUB4 and PUB2 and Function in Cytokinin and Developmental Processes.
    2. AtPUB2 (AT5G67340) does not function in self-incompatibility.
      Title: Exploring the role of a stigma-expressed plant U-box gene in the pollination responses of transgenic self-incompatible Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001345821.1
    NM_126134.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ARM repeat superfamily protein
    NP_201535.3
    • ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: endomembrane system, ubiquitin ligase complex; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein with ARM repeat domain (TAIR:AT2G23140.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26864395..26867847
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126134.5 → NP_201535.3  ARM repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201535.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WNF4, Q5XEZ8, Q9FN17
      UniProtKB/TrEMBL
      A0A178UMI9, A0A5S9YIC1
      Conserved Domains (3) summary
      PLN03200
      Location:440 → 694
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:458 → 490
      ARM; armadillo repeat [structural motif]
      cd16664
      Location:244 → 286
      RING-Ubox_PUB; U-box domain, a modified RING finger, found in Arabidopsis plant U-box proteins (AtPUB) and similar proteins

    2. NM_001345821.1 → NP_001332230.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WNF4, Q5XEZ8, Q9FN17
      UniProtKB/TrEMBL
      A0A178UMI9, A0A5S9YIC1
      Conserved Domains (3) summary
      PLN03200
      Location:440 → 694
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:458 → 490
      ARM; armadillo repeat [structural motif]
      cd16664
      Location:244 → 286
      RING-Ubox_PUB; U-box domain, a modified RING finger, found in Arabidopsis plant U-box proteins (AtPUB) and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5XEZ8.1

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