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    Phosphoglycerate mutase-like family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831359, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Phosphoglycerate mutase-like family protein
    Primary source
    TAIR:AT5G15070
    Locus tag
    AT5G15070
    See related
    Araport:AT5G15070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2G14.190; F2G14_190
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    32
    Sequence:
    Chromosome: 5; NC_003076.8 (4876515..4885836)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein Neighboring gene Lateral organ boundaries (LOB) domain family protein Neighboring gene Protein kinase superfamily protein Neighboring gene voltage dependent anion channel 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. VIH2 Regulates the Synthesis of Inositol Pyrophosphate InsP8 and Jasmonate-Dependent Defenses in Arabidopsis. Laha D, et al. Plant Cell, 2015 Apr. PMID 25901085, Free PMC Article
    2. Genetic basis for natural variation in seed vitamin E levels in Arabidopsis thaliana. Gilliland LU, et al. Proc Natl Acad Sci U S A, 2006 Dec 5. PMID 17077148, Free PMC Article
    3. Two bifunctional inositol pyrophosphate kinases/phosphatases control plant phosphate homeostasis. Zhu J, et al. Elife, 2019 Aug 22. PMID 31436531, Free PMC Article
    4. Two inositol hexakisphosphate kinases drive inositol pyrophosphate synthesis in plants. Desai M, et al. Plant J, 2014 Nov. PMID 25231822
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    NM_001203384.1
    NM_001343387.1
    NM_001343388.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 5-diphosphoinositol pentakisphosphate 1-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables 5-diphosphoinositol pentakisphosphate 1-kinase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables diphosphoinositol pentakisphosphate kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables diphosphoinositol pentakisphosphate kinase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables diphosphoinositol pentakisphosphate kinase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables inositol hexakisphosphate 1-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables inositol hexakisphosphate 3-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables inositol hexakisphosphate 5-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables inositol hexakisphosphate kinase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables inositol hexakisphosphate kinase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables inositol-1,3,4,5,6-pentakisphosphate kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in inositol metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within inositol phosphate biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in inositol phosphate biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within phosphorylation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of vitamin E biosynthetic process ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    Phosphoglycerate mutase-like family protein
    NP_001190313.1
    • Phosphoglycerate mutase-like family protein; FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, acid phosphatase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, embryo, leaf whorl, flower, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-2 (InterPro:IPR000560), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase-like family protein (TAIR:AT3G01310.2).
    NP_568308.1
    • Phosphoglycerate mutase-like family protein; FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, acid phosphatase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-2 (InterPro:IPR000560), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase-like family protein (TAIR:AT3G01310.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4876515..4885836
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343386.1 → NP_001330694.1  Phosphoglycerate mutase-like family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BBL1, A0A5S9Y4Y3, A0A654G1C1, A0A7G2F803
      Conserved Domains (3) summary
      pfam00328
      Location:368 → 959
      His_Phos_2; Histidine phosphatase superfamily (branch 2)
      pfam18086
      Location:13 → 108
      PPIP5K2_N; Diphosphoinositol pentakisphosphate kinase 2 N-terminal domain
      cl17255
      Location:28 → 300
      CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain

    2. NM_121511.2 → NP_568308.1  Phosphoglycerate mutase-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568308.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K8B7, Q84WW3, Q93YV1, Q9LFP8
      UniProtKB/TrEMBL
      A0A5S9Y4Y3, A0A654G1C1, A0A7G2F7R8
      Conserved Domains (3) summary
      pfam00328
      Location:362 → 953
      His_Phos_2; Histidine phosphatase superfamily (branch 2)
      pfam18086
      Location:13 → 102
      PPIP5K2_N; Diphosphoinositol pentakisphosphate kinase 2 N-terminal domain
      cl17255
      Location:17 → 294
      CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain

    3. NM_001343384.1 → NP_001330691.1  Phosphoglycerate mutase-like family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BBK5, A0A5S9Y4Y3, A0A654G1C1

    4. NM_001343385.1 → NP_001330695.1  Phosphoglycerate mutase-like family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K8B7, Q84WW3, Q93YV1, Q9LFP8
      UniProtKB/TrEMBL
      A0A5S9Y4Y3, A0A654G1C1, A0A7G2F7R8
      Conserved Domains (3) summary
      pfam00328
      Location:362 → 953
      His_Phos_2; Histidine phosphatase superfamily (branch 2)
      pfam18086
      Location:13 → 102
      PPIP5K2_N; Diphosphoinositol pentakisphosphate kinase 2 N-terminal domain
      cl17255
      Location:17 → 294
      CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain

    5. NM_001203384.1 → NP_001190313.1  Phosphoglycerate mutase-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190313.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y4Y3, A0A654G1C1
      Conserved Domains (2) summary
      pfam00328
      Location:362 → 938
      His_Phos_2; Histidine phosphatase superfamily (branch 2)
      cl17255
      Location:102 → 293
      ATP-grasp_4; ATP-grasp domain

    6. NM_001343387.1 → NP_001330693.1  Phosphoglycerate mutase-like family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UC62, A0A1P8BBN0

    7. NM_001343388.1 → NP_001330692.1  Phosphoglycerate mutase-like family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UC62, A0A1P8BBN0
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84WW3.1

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