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    40S ribosomal protein S15a [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818544, updated on 18-Sep-2024

    Summary

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    Official Full Name
    40S ribosomal protein S15a
    Primary source
    TAIR:AT2G39590
    Locus tag
    AT2G39590
    See related
    Araport:AT2G39590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12L6.25; F12L6_25
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (16517588..16518247, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ACT domain-containing protein Neighboring gene zinc finger C3H1 domain protein Neighboring gene tRNA-Cys Neighboring gene tRNA-Cys

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    part_of cytosolic small ribosomal subunit HDA PubMed 

    General protein information

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    Preferred Names
    40S ribosomal protein S15a
    NP_181491.2
    • Ribosomal protein S8 family protein; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8 family protein (TAIR:AT5G59850.1); Has 4287 Blast hits to 4287 proteins in 1592 species: Archae - 277; Bacteria - 2368; Metazoa - 435; Fungi - 223; Plants - 268; Viruses - 0; Other Eukaryotes - 716 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16517588..16518247 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129517.2 → NP_181491.2  40S ribosomal protein S15a [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IVX8, O80646
      UniProtKB/TrEMBL
      A0A5S9X5G1, A0A654F5L8, A0MES6
      Conserved Domains (1) summary
      PLN00146
      Location:1 → 130
      PLN00146; 40S ribosomal protein S15a; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O80646.2

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