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    CHL-CPN10 chloroplast chaperonin 10 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819073, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CHL-CPN10
    Official Full Name
    chloroplast chaperonin 10
    Primary source
    TAIR:AT2G44650
    Locus tag
    AT2G44650
    See related
    Araport:AT2G44650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    chloroplast chaperonin 10; CHLOROPLAST CHAPERONIN 10; CPN10; F16B22.14
    Summary
    Encodes a chloroplast-localized chaperonin 10 whose mRNA is expressed in leaves and stems but not roots.
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    Genomic context

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    See CHL-CPN10 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (18419370..18421110, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene mitochondrial acyl carrier protein 1 Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene TRIGALACTOSYLDIACYLGLYCEROL-like protein Neighboring gene ALG6, ALG8 glycosyltransferase family Neighboring gene ncRNA Neighboring gene senescence-associated family protein (DUF581)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chloroplasts have a novel Cpn10 in addition to Cpn20 as co-chaperonins in Arabidopsis thaliana. Koumoto Y, et al. J Biol Chem, 2001 Aug 10. PMID 11402030
    2. A split-ubiquitin yeast two-hybrid screen to examine the substrate specificity of atToc159 and atToc132, two Arabidopsis chloroplast preprotein import receptors. Dutta S, et al. PLoS One, 2014. PMID 24736607, Free PMC Article
    3. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
    4. The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. Peltier JB, et al. Mol Cell Proteomics, 2006 Jan. PMID 16207701
    5. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_130029.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein folding chaperone IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein-folding chaperone binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein folding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast stroma HDA PubMed 
    located_in chloroplast stroma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    chloroplast chaperonin 10
    NP_566022.1
    • chloroplast chaperonin 10 (CHL-CPN10); FUNCTIONS IN: chaperone binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn10 (InterPro:IPR020818), GroES-like (InterPro:IPR011032), Chaperonin Cpn10, subgroup (InterPro:IPR001476); BEST Arabidopsis thaliana protein match is: GroES-like family protein (TAIR:AT3G60210.1); Has 1290 Blast hits to 1286 proteins in 416 species: Archae - 0; Bacteria - 806; Metazoa - 57; Fungi - 4; Plants - 146; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18419370..18421110 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130029.4 → NP_566022.1  chloroplast chaperonin 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566022.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80504, Q94F15
      UniProtKB/TrEMBL
      A0A178VYR3, A0A5S9X7B2, A0A654FCH5
      Conserved Domains (1) summary
      cd00320
      Location:51 → 138
      cpn10; Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O80504.1

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