U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817277, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein
    Primary source
    TAIR:AT2G27340
    Locus tag
    AT2G27340
    See related
    Araport:AT2G27340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12K2.8
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    11
    Sequence:
    Chromosome: 2; NC_003071.7 (11696595..11699224)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene egg cell-secreted-like protein (DUF1278) Neighboring gene NEP-interacting protein, putative (DUF239) Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene OTU-like cysteine protease family protein Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001036354.2
    NM_001084500.2
    NM_001336113.1
    NM_128293.4
    NM_201814.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables N-acetylglucosaminylphosphatidylinositol deacetylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in GPI anchor biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein
    NP_001031431.1
    • N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: N-acetylglucosaminyl phosphatidylinositol deacetylase (InterPro:IPR003737); BEST Arabidopsis thaliana protein match is: N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein (TAIR:AT3G58130.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001077969.1
    • N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: N-acetylglucosaminyl phosphatidylinositol deacetylase (InterPro:IPR003737); BEST Arabidopsis thaliana protein match is: N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein (TAIR:AT3G58130.2); Has 538 Blast hits to 534 proteins in 245 species: Archae - 0; Bacteria - 137; Metazoa - 107; Fungi - 162; Plants - 52; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
    NP_565647.3
    • N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein; CONTAINS InterPro DOMAIN/s: N-acetylglucosaminyl phosphatidylinositol deacetylase (InterPro:IPR003737); BEST Arabidopsis thaliana protein match is: N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein (TAIR:AT3G58130.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_973543.1
    • N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: N-acetylglucosaminyl phosphatidylinositol deacetylase (InterPro:IPR003737); BEST Arabidopsis thaliana protein match is: N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein (TAIR:AT3G58130.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11696595..11699224
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_201814.3 → NP_973543.1  N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973543.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1V6, Q6NLZ3
      Conserved Domains (1) summary
      pfam02585
      Location:42 → 162
      PIG-L; GlcNAc-PI de-N-acetylase

    2. NM_001084500.2 → NP_001077969.1  N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077969.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1V6, Q6NLZ3
      Conserved Domains (1) summary
      pfam02585
      Location:42 → 162
      PIG-L; GlcNAc-PI de-N-acetylase

    3. NM_001036354.2 → NP_001031431.1  N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031431.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1V6, Q6NLZ3
      Conserved Domains (1) summary
      pfam02585
      Location:42 → 162
      PIG-L; GlcNAc-PI de-N-acetylase

    4. NM_001336113.1 → NP_001323821.1  N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AY92, A0A654EXU2

    5. NM_128293.4 → NP_565647.3  N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IFS4, Q0WWG5
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools