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    coiled-coil protein (DUF2040) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817270, updated on 18-Sep-2024

    Summary

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    Official Full Name
    coiled-coil protein (DUF2040)
    Primary source
    TAIR:AT2G27280
    Locus tag
    AT2G27280
    See related
    Araport:AT2G27280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12K2.14; F12K2_14
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (11673826..11675613, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene nuclear speckle splicing regulatory-like protein (DUF2040) Neighboring gene FAM210B-like protein, putative (DUF1279)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_128286.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil protein (DUF2040)
    NP_565643.1
    • Coiled-coil domain-containing protein 55 (DUF2040); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2040, coiled-coil (InterPro:IPR018612); BEST Arabidopsis thaliana protein match is: Coiled-coil domain-containing protein 55 (DUF2040) (TAIR:AT2G27285.1); Has 17369 Blast hits to 12141 proteins in 914 species: Archae - 89; Bacteria - 1500; Metazoa - 7358; Fungi - 1475; Plants - 656; Viruses - 55; Other Eukaryotes - 6236 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11673826..11675613 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128286.1 → NP_565643.1  coiled-coil protein (DUF2040) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565643.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X1U8, A0A654EWM6, Q9XIN5
      Conserved Domains (2) summary
      PTZ00121
      Location:186 → 427
      PTZ00121; MAEBL; Provisional
      pfam09745
      Location:196 → 313
      DUF2040; Coiled-coil domain-containing protein 55 (DUF2040)
    Nucleotide Protein
    Heading Accession and Version

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