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    S-locus lectin protein kinase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842433, updated on 18-Sep-2024

    Summary

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    Official Full Name
    S-locus lectin protein kinase family protein
    Primary source
    TAIR:AT1G61390
    Locus tag
    AT1G61390
    See related
    Araport:AT1G61390
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1F9.12; T1F9_12
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (22650111..22654395, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene S-locus lectin protein kinase family protein Neighboring gene S-locus lectin protein kinase family protein Neighboring gene S-domain-1 29 Neighboring gene S-locus lectin protein kinase family protein Neighboring gene DNA double-strand break repair and VJ recombination XRCC4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_104820.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calmodulin binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein serine/threonine kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in recognition of pollen IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    S-locus lectin protein kinase family protein
    NP_001154439.1
    • S-locus lectin protein kinase family protein; FUNCTIONS IN: carbohydrate binding, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; CONTAINS InterPro DOMAIN/s: Apple-like (InterPro:IPR003609), PAN-2 domain (InterPro:IPR013227), S-locus receptor kinase, C-terminal (InterPro:IPR021820), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-domain-1 29 (TAIR:AT1G61380.1); Has 121755 Blast hits to 120061 proteins in 4542 species: Archae - 112; Bacteria - 13453; Metazoa - 45372; Fungi - 9712; Plants - 35005; Viruses - 409; Other Eukaryotes - 17692 (source: NCBI BLink).
    NP_176334.1
    • S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), S-locus receptor kinase, C-terminal (InterPro:IPR021820), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), EGF-like (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: S-domain-1 29 (TAIR:AT1G61380.1); Has 120516 Blast hits to 118768 proteins in 4467 species: Archae - 112; Bacteria - 13121; Metazoa - 44663; Fungi - 10090; Plants - 34590; Viruses - 405; Other Eukaryotes - 17535 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22650111..22654395 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001160967.2 → NP_001154439.1  S-locus lectin protein kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154439.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W2U0
      Conserved Domains (5) summary
      smart00219
      Location:357 → 621
      TyrKc; Tyrosine kinase, catalytic domain
      cd01098
      Location:181 → 270
      PAN_AP_plant; Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and ...
      pfam11883
      Location:622 → 663
      DUF3403; Domain of unknown function (DUF3403)
      cd14066
      Location:358 → 624
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam00954
      Location:55 → 164
      S_locus_glycop; S-locus glycoprotein domain

    2. NM_104820.2 → NP_176334.1  S-locus lectin protein kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176334.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64781
      UniProtKB/TrEMBL
      A0A5S9WR66
      Conserved Domains (5) summary
      cd00028
      Location:47 → 164
      B_lectin; Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically ...
      cd01098
      Location:349 → 438
      PAN_AP_plant; Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and ...
      cd14066
      Location:526 → 792
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam00954
      Location:223 → 332
      S_locus_glycop; S-locus glycoprotein domain
      pfam11883
      Location:790 → 831
      DUF3403; Domain of unknown function (DUF3403)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O64781.1

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