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    LSM2 Small nuclear ribonucleoprotein family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839526, updated on 18-Sep-2024

    Summary

    Official Symbol
    LSM2
    Official Full Name
    Small nuclear ribonucleoprotein family protein
    Primary source
    TAIR:AT1G03330
    Locus tag
    AT1G03330
    See related
    Araport:AT1G03330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15K9.7; F15K9_7; SM-like 2
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    Genomic context

    See LSM2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (817934..819563, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene debranching enzyme 1 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene BSD domain-containing protein

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_100215.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    Small nuclear ribonucleoprotein family protein
    NP_563682.1
    • Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), U6 snRNA-associated Sm-like protein LSm2 (InterPro:IPR016654), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); Has 762 Blast hits to 762 proteins in 209 species: Archae - 2; Bacteria - 0; Metazoa - 303; Fungi - 225; Plants - 97; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      817934..819563 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100215.4NP_563682.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563682.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1H595, Q8L5U6, Q9ZVT4
      UniProtKB/TrEMBL
      A0A178W785, A0A5S9SDG0
      Conserved Domains (1) summary
      cd01725
      Location:290
      LSm2; Like-Sm protein 2