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    Thioesterase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816756, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Thioesterase superfamily protein
    Primary source
    TAIR:AT2G22230
    Locus tag
    AT2G22230
    See related
    Araport:AT2G22230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T26C19.11; T26C19_11
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (9449930..9451623)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene tRNA-Ile Neighboring gene myo-inositol-1-phosphate synthase 2 Neighboring gene uncharacterized protein Neighboring gene aspartate aminotransferase Neighboring gene oxidoreductase, 2OG-Fe(II) oxygenase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proof of function of a putative 3-hydroxyacyl-acyl carrier protein dehydratase from higher plants by mass spectrometry of product formation. Brown A, et al. FEBS Lett, 2009 Jan 22. PMID 19101548
    2. Proteomics of the response of Arabidopsis thaliana to infection with Alternaria brassicicola. Mukherjee AK, et al. J Proteomics, 2010 Feb 10. PMID 19857612
    3. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
    4. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
    5. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A putative A. thaliana 3-hydroxyacyl-acyl carrier protein dehydratase was expressed, purified, and its activity was characterized.
      Title: Proof of function of a putative 3-hydroxyacyl-acyl carrier protein dehydratase from higher plants by mass spectrometry of product formation.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_127789.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to fungus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in fatty acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid HDA PubMed 
    located_in plant-type cell wall HDA PubMed 
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Thioesterase superfamily protein
    NP_565528.1
    • Thioesterase superfamily protein; FUNCTIONS IN: crotonoyl-[acyl-carrier-protein] hydratase activity, 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity; INVOLVED IN: defense response to fungus, incompatible interaction, fatty acid biosynthetic process; LOCATED IN: cell wall, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (InterPro:IPR013114), Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ (InterPro:IPR010084); BEST Arabidopsis thaliana protein match is: Thioesterase superfamily protein (TAIR:AT5G10160.1); Has 7405 Blast hits to 7398 proteins in 2208 species: Archae - 0; Bacteria - 5424; Metazoa - 2; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 1894 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9449930..9451623
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127789.4 → NP_565528.1  Thioesterase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565528.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W084, Q9SIE3
      Conserved Domains (1) summary
      PRK00006
      Location:73 → 213
      fabZ; 3-hydroxyacyl-ACP dehydratase FabZ
    Nucleotide Protein
    Heading Accession and Version

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