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    SYP51 syntaxin of plants 51 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838193, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SYP51
    Official Full Name
    syntaxin of plants 51
    Primary source
    TAIR:AT1G16240
    Locus tag
    AT1G16240
    See related
    Araport:AT1G16240
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATSYP51; F3O9.4; F3O9_4; syntaxin of plants 51
    Summary
    Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.
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    Genomic context

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    See SYP51 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (5554843..5556844, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Target SNARE coiled-coil domain protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene Wall-associated kinase family protein Neighboring gene kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein Neighboring gene RNA helicase 36

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtSYP51/52 functions diverge in the post-Golgi traffic and differently affect vacuolar sorting. De Benedictis M, et al. Mol Plant, 2013 May. PMID 23087325
    2. Split luciferase complementation assay to study protein-protein interactions in Arabidopsis protoplasts. Fujikawa Y, et al. Plant J, 2007 Oct. PMID 17662028
    3. Interactions between syntaxins identify at least five SNARE complexes within the Golgi/prevacuolar system of the Arabidopsis cell. Sanderfoot AA, et al. Mol Biol Cell, 2001 Dec. PMID 11739776, Free PMC Article
    4. The Arabidopsis genome. An abundance of soluble N-ethylmaleimide-sensitive factor adaptor protein receptors. Sanderfoot AA, et al. Plant Physiol, 2000 Dec. PMID 11115874, Free PMC Article
    5. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. the AtSYP51 and the AtSYP52 roles differ in the traffic to the vacuole.
      Title: AtSYP51/52 functions diverge in the post-Golgi traffic and differently affect vacuolar sorting.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001035977.1
    NM_001084077.1
    NM_001332216.1
    NM_101490.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables SNAP receptor activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within vesicle-mediated transport TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endosome membrane NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in endosome membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus HDA PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    syntaxin of plants 51
    NP_001031054.1
    • syntaxin of plants 51 (SYP51); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endosome membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 52 (TAIR:AT1G79590.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001077546.1
    • syntaxin of plants 51 (SYP51); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 52 (TAIR:AT1G79590.2); Has 550 Blast hits to 550 proteins in 163 species: Archae - 0; Bacteria - 4; Metazoa - 169; Fungi - 163; Plants - 161; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
    NP_563994.1
    • syntaxin of plants 51 (SYP51); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endosome membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 52 (TAIR:AT1G79590.2); Has 837 Blast hits to 837 proteins in 196 species: Archae - 0; Bacteria - 4; Metazoa - 265; Fungi - 234; Plants - 241; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5554843..5556844 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101490.4 → NP_563994.1  syntaxin of plants 51 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563994.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SA23
      UniProtKB/TrEMBL
      A0A178WJ29, A0A384LE08, A0A7G2DW90, B9DHH7
      Conserved Domains (2) summary
      cd15841
      Location:139 → 196
      SNARE_Qc; SNARE motif, subgroup Qc
      pfam05739
      Location:172 → 223
      SNARE; SNARE domain

    2. NM_001084077.1 → NP_001077546.1  syntaxin of plants 51 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077546.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DW90, A8MRW0
      Conserved Domains (1) summary
      cd15841
      Location:139 → 191
      SNARE_Qc; SNARE motif, subgroup Qc

    3. NM_001035977.1 → NP_001031054.1  syntaxin of plants 51 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031054.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SA23
      UniProtKB/TrEMBL
      A0A178WJ29, A0A384LE08, A0A7G2DW90, B9DHH7
      Conserved Domains (2) summary
      cd15841
      Location:139 → 196
      SNARE_Qc; SNARE motif, subgroup Qc
      pfam05739
      Location:172 → 223
      SNARE; SNARE domain

    4. NM_001332216.1 → NP_001323228.1  syntaxin of plants 51 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SA23
      UniProtKB/TrEMBL
      A0A178WJ29, A0A384LE08, A0A7G2DW90, B9DHH7
      Conserved Domains (2) summary
      cd15841
      Location:139 → 196
      SNARE_Qc; SNARE motif, subgroup Qc
      pfam05739
      Location:172 → 223
      SNARE; SNARE domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SA23.1

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