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    zinc finger/BTB domain protein, putative (DUF1644) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843142, updated on 18-Sep-2024

    Summary

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    Official Full Name
    zinc finger/BTB domain protein, putative (DUF1644)
    Primary source
    TAIR:AT1G68140
    Locus tag
    AT1G68140
    See related
    Araport:AT1G68140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T23K23.1
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (25538924..25541823, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene indeterminate(ID)-domain 14 Neighboring gene ncRNA Neighboring gene WRKY DNA-binding protein 9 Neighboring gene ZZ-type zinc finger protein, putative (DUF3755) Neighboring gene nodulin MtN21 /EamA-like transporter family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036173.2
    NM_001198421.1
    NM_001334347.1
    NM_105484.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger/BTB domain protein, putative (DUF1644)
    NP_001031250.1
    • Protein of unknown function (DUF1644); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT4G08460.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001319342.1
    • Protein of unknown function (DUF1644); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT4G08460.3).
    NP_176981.1
    • Protein of unknown function (DUF1644); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT4G08460.3); Has 266 Blast hits to 248 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 266; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25538924..25541823 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105484.5 → NP_176981.1  zinc finger/BTB domain protein, putative (DUF1644) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176981.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W4N8, A0A384LJ82, A0A654ES66, Q9C9X8
      Conserved Domains (1) summary
      pfam07800
      Location:51 → 199
      DUF1644; Protein of unknown function (DUF1644)

    2. NM_001198421.1 → NP_001185350.1  zinc finger/BTB domain protein, putative (DUF1644) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185350.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W4N8, A0A384LJ82, A0A654ES66, Q9C9X8
      Conserved Domains (1) summary
      pfam07800
      Location:51 → 199
      DUF1644; Protein of unknown function (DUF1644)

    3. NM_001334347.1 → NP_001319342.1  zinc finger/BTB domain protein, putative (DUF1644) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W4N8, A0A384LJ82, A0A654ES66, Q9C9X8
      Conserved Domains (1) summary
      pfam07800
      Location:51 → 199
      DUF1644; Protein of unknown function (DUF1644)

    4. NM_001036173.2 → NP_001031250.1  zinc finger/BTB domain protein, putative (DUF1644) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031250.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E362, F4HVL8
      Conserved Domains (1) summary
      pfam07800
      Location:51 → 199
      DUF1644; Protein of unknown function (DUF1644)
    Nucleotide Protein
    Heading Accession and Version

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