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    Ribonuclease II/R family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844104, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribonuclease II/R family protein
    Primary source
    TAIR:AT1G77680
    Locus tag
    AT1G77680
    See related
    Araport:AT1G77680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtRRP44B; Rrp44 homolog B; RRP44B; SOV; SUPPRESSOR OF VARICOSE
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (29191720..29196290, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Histone H3 K4-specific methyltransferase SET7/9 family protein Neighboring gene Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Neighboring gene Plant thionin family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. X-ray structure of Arabidopsis At1g77680, 12-oxophytodienoate reductase isoform 1. Fox BG, et al. Proteins, 2005 Oct 1. PMID 16080145
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. X Ray Crystallography of At1g77680
      Title: X-ray structure of Arabidopsis At1g77680, 12-oxophytodienoate reductase isoform 1.
    Submit: New GeneRIF Correction

    General gene information

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    NM_106417.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ribonuclease II/R family protein
    NP_177891.1
    • Ribonuclease II/R family protein; FUNCTIONS IN: ribonuclease activity, RNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease II/R (InterPro:IPR001900); BEST Arabidopsis thaliana protein match is: ribonuclease II family protein (TAIR:AT2G17510.1); Has 8235 Blast hits to 8065 proteins in 2328 species: Archae - 43; Bacteria - 5411; Metazoa - 476; Fungi - 391; Plants - 139; Viruses - 2; Other Eukaryotes - 1773 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29191720..29196290 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106417.3 → NP_177891.1  Ribonuclease II/R family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177891.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P0DM58, Q0WPN0, Q56WY4, Q9CA26
      UniProtKB/TrEMBL
      A0A178WK27
      Conserved Domains (2) summary
      COG0557
      Location:317 → 817
      VacB; Exoribonuclease R [Transcription]
      pfam00773
      Location:476 → 817
      RNB; RNB domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0WPN0.1

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