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    FAC19 Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837941, updated on 18-Sep-2024

    Summary

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    Official Symbol
    FAC19
    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT1G13800
    Locus tag
    AT1G13800
    See related
    Araport:AT1G13800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    embryonic factor 19; F16A14.3; F16A14_3
    Summary
    Encodes a PPR (pentatricopeptide repeat motif) protein that is essential for the initiation of zygotic embryogenesis.
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    Genomic context

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    See FAC19 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (4730395..4733869, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene root UVB sensitive protein (Protein of unknown function, DUF647) Neighboring gene F-box/RNI-like/FBD-like domains-containing protein Neighboring gene XH/XS domain-containing protein Neighboring gene uncharacterized protein Neighboring gene Restriction endonuclease, type II-like superfamily protein Neighboring gene alpha/beta-Hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EMBRYONIC FACTOR 19 encodes a pentatricopeptide repeat protein that is essential for the initiation of zygotic embryogenesis in Arabidopsis. Yu D, et al. J Integr Plant Biol, 2012 Jan. PMID 22099059
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. critical role in activation of zygotic embryogenesis
      Title: EMBRYONIC FACTOR 19 encodes a pentatricopeptide repeat protein that is essential for the initiation of zygotic embryogenesis in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_001318997.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G26790.1); Has 64040 Blast hits to 14329 proteins in 287 species: Archae - 5; Bacteria - 54; Metazoa - 543; Fungi - 727; Plants - 60798; Viruses - 0; Other Eukaryotes - 1913 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4730395..4733869 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332089.1 → NP_001318997.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LMH5
      UniProtKB/TrEMBL
      A0A178WE79, A0A5S9UA47
      Conserved Domains (3) summary
      PLN03218
      Location:330 → 872
      PLN03218; maturation of RBCL 1; Provisional
      COG0457
      Location:204 → 422
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00004
      Location:763 → 790
      PPR; PPR repeat [structural motif]

    2. NM_101248.2 → NP_172835.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172835.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LMH5
      UniProtKB/TrEMBL
      A0A178WE79, A0A5S9UA47
      Conserved Domains (3) summary
      PLN03218
      Location:330 → 872
      PLN03218; maturation of RBCL 1; Provisional
      COG0457
      Location:204 → 422
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00004
      Location:763 → 790
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LMH5.1

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