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    Plant self-incompatibility protein S1 family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820965, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Plant self-incompatibility protein S1 family
    Primary source
    TAIR:AT3G17080
    Locus tag
    AT3G17080
    See related
    Araport:AT3G17080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (5825289..5825867)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene Peroxidase family protein Neighboring gene Protein phosphatase 2C family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_112584.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Plant self-incompatibility protein S1 family
    NP_188333.1
    • Plant self-incompatibility protein S1 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: synergid; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT3G16970.1); Has 335 Blast hits to 324 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 332; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5825289..5825867
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112584.1 → NP_188333.1  Plant self-incompatibility protein S1 family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188333.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VK74, Q9LSN9
      Conserved Domains (1) summary
      pfam05938
      Location:27 → 118
      Self-incomp_S1; Plant self-incompatibility protein S1
    Nucleotide Protein
    Heading Accession and Version

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