GDAP1 GRIP-related ARF-binding domain-containing protein 1 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: GDAP1
Official Full Name: GRIP-related ARF-binding domain-containing protein 1
Primary source: TAIR:AT3G61570
Locus tag: AT3G61570
See related: Araport:AT3G61570
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: GC3; GOLGIN CANDIDATE 3; GRIP-related ARF-binding domain-containing protein 1
Summary: This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC3 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (161 aa) portion of the protein.
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Genomic context

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See GDAP1 in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 15

Sequence:: Chromosome: 3; NC_003074.8 (22779441..22783938, complement)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001340110.1

Supported by ESTs:

NM_116022.5

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within Golgi organization	ISS Inferred from Sequence or Structural Similarity more info	PubMed

Component	Evidence Code	Pubs
located_in Golgi apparatus	IDA Inferred from Direct Assay more info	PubMed
located_in extracellular region	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: GRIP-related ARF-binding domain-containing protein 1

NP_191716.2

GRIP-related ARF-binding domain-containing protein 1 (GDAP1); BEST Arabidopsis thaliana protein match is: golgin candidate 4 (TAIR:AT2G46180.1); Has 126642 Blast hits to 68271 proteins in 2953 species: Archae - 1677; Bacteria - 19686; Metazoa - 56998; Fungi - 11244; Plants - 6158; Viruses - 661; Other Eukaryotes - 30218 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

22779441..22783938 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_116022.5 → NP_191716.2 GRIP-related ARF-binding domain-containing protein 1 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_191716.2

Status: REVIEWED

UniProtKB/Swiss-Prot

Q84WU4, Q9M311

UniProtKB/TrEMBL

A0A178VHZ9, A0A5S9XN22, A0A654FJT0

Conserved Domains (1) summary

COG1196
Location:200 → 549

Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
NM_001340110.1 → NP_001327121.1 GRIP-related ARF-binding domain-containing protein 1 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VHZ9, A0A1I9LRB9, A0A654FJT0