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    DDT domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830764, updated on 18-Sep-2024

    Summary

    Official Full Name
    DDT domain-containing protein
    Primary source
    TAIR:AT5G08630
    Locus tag
    AT5G08630
    See related
    Araport:AT5G08630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MAH20.19; MAH20_19
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    Genomic context

    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (2798010..2803205, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene DEA(D/H)-box RNA helicase family protein Neighboring gene flavonol synthase 1 Neighboring gene Small GTP-binding protein

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001343025.1
    NM_120950.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of ISWI-type complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    DDT domain-containing protein
    NP_196480.2
    • DDT domain-containing protein; CONTAINS InterPro DOMAIN/s: DDT domain superfamily (InterPro:IPR018501), DDT domain (InterPro:IPR004022), DDT domain, subgroup (InterPro:IPR018500), WSTF/Acf1/Cbp146 (InterPro:IPR013136); Has 7496 Blast hits to 4698 proteins in 418 species: Archae - 4; Bacteria - 337; Metazoa - 2683; Fungi - 719; Plants - 380; Viruses - 89; Other Eukaryotes - 3284 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2798010..2803205 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343024.1NP_001332612.1  DDT domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178ULX5, A0A384LG90, A0A7G2F651, F4KB54
      Conserved Domains (4) summary
      pfam02791
      Location:298355
      DDT; DDT domain
      pfam10537
      Location:24120
      WAC_Acf1_DNA_bd; ATP-utilising chromatin assembly and remodelling N-terminal
      pfam15612
      Location:399435
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15613
      Location:603667
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    2. NM_120950.5NP_196480.2  DDT domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196480.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178ULX5, A0A384LG90, A0A7G2F651, F4KB54
      Conserved Domains (4) summary
      pfam02791
      Location:298355
      DDT; DDT domain
      pfam10537
      Location:24120
      WAC_Acf1_DNA_bd; ATP-utilising chromatin assembly and remodelling N-terminal
      pfam15612
      Location:399435
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15613
      Location:603667
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    3. NM_001343025.1NP_001332611.1  DDT domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178ULX5, A0A384LG90, A0A7G2F651, F4KB54
      Conserved Domains (4) summary
      pfam02791
      Location:298355
      DDT; DDT domain
      pfam10537
      Location:24120
      WAC_Acf1_DNA_bd; ATP-utilising chromatin assembly and remodelling N-terminal
      pfam15612
      Location:399435
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15613
      Location:603667
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif