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    RNA-directed DNA polymerase (reverse transcriptase)-related family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832006, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA-directed DNA polymerase (reverse transcriptase)-related family protein
    Primary source
    TAIR:AT5G18880
    Locus tag
    AT5G18880
    See related
    Araport:AT5G18880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17K4.130; F17K4_130
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (6300535..6301422, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene inosine-uridine preferring nucleoside hydrolase family protein Neighboring gene Inosine-uridine preferring nucleoside hydrolase family protein Neighboring gene Inosine-uridine preferring nucleoside hydrolase family protein Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Receptor-like protein ELT1 promotes brassinosteroid signaling through interacting with and suppressing the endocytosis-mediated degradation of receptor BRI1. Yang BJ, et al. Cell Res, 2017 Sep. PMID 28497809, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ELT1 as a novel key regulator of rice brassinosteroids signaling by suppressing BRI1 internalization.[ELT1]
      Title: Receptor-like protein ELT1 promotes brassinosteroid signaling through interacting with and suppressing the endocytosis-mediated degradation of receptor BRI1.
    Submit: New GeneRIF Correction

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    RNA-directed DNA polymerase (reverse transcriptase)-related family protein
    NP_197389.1
    • RNA-directed DNA polymerase (reverse transcriptase)-related family protein; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT4G04650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6300535..6301422 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121893.1 → NP_197389.1  RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197389.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y5Y1, Q3E9D7
      Conserved Domains (1) summary
      pfam13966
      Location:109 → 193
      zf-RVT; zinc-binding in reverse transcriptase
    Nucleotide Protein
    Heading Accession and Version

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