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    Transport protein particle (TRAPP) component [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835915, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Transport protein particle (TRAPP) component
    Primary source
    TAIR:AT5G58030
    Locus tag
    AT5G58030
    See related
    Araport:AT5G58030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K21L19.2
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    8
    Sequence:
    Chromosome: 5; NC_003076.8 (23486777..23488620, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Cytochrome c oxidase, subunit Vib family protein Neighboring gene LJRHL1-like 3 Neighboring gene RTF2 RING-finger protein Neighboring gene FIP1[V]-like protein Neighboring gene SHV3-like 4 Neighboring gene SNARE-like superfamily protein Neighboring gene temperature-induced lipocalin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plant cytokinesis is orchestrated by the sequential action of the TRAPPII and exocyst tethering complexes. Rybak K, et al. Dev Cell, 2014 Jun 9. PMID 24882377
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_125188.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in Golgi vesicle transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of TRAPP complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    Transport protein particle (TRAPP) component
    NP_200611.1
    • Transport protein particle (TRAPP) component; CONTAINS InterPro DOMAIN/s: Transport protein particle (TRAPP) component (InterPro:IPR007194), TRAPP I complex, Trs31 (InterPro:IPR016696); Has 560 Blast hits to 545 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 199; Fungi - 199; Plants - 63; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23486777..23488620 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125188.3 → NP_200611.1  Transport protein particle (TRAPP) component [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200611.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UEK1, Q9FGU1
      Conserved Domains (1) summary
      cd14943
      Location:25 → 182
      TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex
    Nucleotide Protein
    Heading Accession and Version

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