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    Pectate lyase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831363, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pectate lyase family protein
    Primary source
    TAIR:AT5G15110
    Locus tag
    AT5G15110
    See related
    Araport:AT5G15110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2G14.230; F2G14_230
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (4895750..4897966)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene voltage dependent anion channel 3 Neighboring gene Auxin efflux carrier family protein Neighboring gene 2-aminoethanethiol dioxygenase, putative (DUF1637) Neighboring gene WRKY DNA-binding protein 72

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_121515.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables lyase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pectate lyase family protein
    NP_197015.4
    • Pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectate lyase, N-terminal (InterPro:IPR007524), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectate lyase family protein (TAIR:AT3G01270.1); Has 1602 Blast hits to 1594 proteins in 273 species: Archae - 0; Bacteria - 694; Metazoa - 0; Fungi - 171; Plants - 721; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4895750..4897966
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121515.6 → NP_197015.4  Pectate lyase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197015.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0MFG0, Q9LFP5
      UniProtKB/TrEMBL
      A0A178UDH1
      Conserved Domains (2) summary
      smart00656
      Location:196 → 391
      Amb_all; Amb_all domain
      pfam04431
      Location:26 → 103
      Pec_lyase_N; Pectate lyase, N terminus
    Nucleotide Protein
    Heading Accession and Version

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