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    Lrrc14b leucine rich repeat containing 14B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 502225, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Lrrc14bprovided by RGD
    Official Full Name
    leucine rich repeat containing 14Bprovided by RGD
    Primary source
    RGD:1564978
    See related
    EnsemblRapid:ENSRNOG00000028357 AllianceGenome:RGD:1564978
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564978
    Summary
    Orthologous to human LRRC14B (leucine rich repeat containing 14B). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Muscle (RPKM 290.8), Heart (RPKM 258.0) and 4 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Lrrc14b in Genome Data Viewer
    Location:
    1p11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (30748103..30754236)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (28921475..28925646)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (31531143..31535314)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 502 Neighboring gene Bcl2-like 13, pseudogene 1 Neighboring gene ribosomal protein L26, pseudogene 2 Neighboring gene coiled-coil domain containing 127 Neighboring gene succinate dehydrogenase complex flavoprotein subunit A Neighboring gene eukaryotic translation initiation factor 1, pseudogene 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    leucine-rich repeat-containing protein 14B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109333.1 → NP_001102803.1  leucine-rich repeat-containing protein 14B

      See identical proteins and their annotated locations for NP_001102803.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474002
      UniProtKB/TrEMBL
      A6JUU3, D3ZJ80
      Related
      ENSRNOP00000032819.5, ENSRNOT00000034704.8
      Conserved Domains (3) summary
      cd00116
      Location:260 → 397
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00031
      Location:302 → 325
      LRR_1; leucine-rich repeat [structural motif]
      pfam13855
      Location:302 → 368
      LRR_8; Leucine rich repeat

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      30748103..30754236
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063271819.1 → XP_063127889.1  leucine-rich repeat-containing protein 14B isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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