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    Nkapd1 NKAP domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100151767, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Nkapd1provided by RGD
    Official Full Name
    NKAP domain containing 1provided by RGD
    Primary source
    RGD:2293296
    See related
    EnsemblRapid:ENSRNOG00000009958 AllianceGenome:RGD:2293296
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable identical protein binding activity. Orthologous to human NKAPD1 (NKAP domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 127.4), Lung (RPKM 119.9) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Nkapd1 in Genome Data Viewer
    Location:
    8q23
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (59852037..59863295, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (50955650..50966915, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (55039731..55050259, complement)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene interleukin 18 Neighboring gene testis expressed 12 Neighboring gene succinate dehydrogenase complex subunit D Neighboring gene translocase of inner mitochondrial membrane 8 homolog B Neighboring gene PIH1 domain containing 2 Neighboring gene dihydrolipoamide S-acetyltransferase Neighboring gene DIX domain containing 1 Neighboring gene uncharacterized LOC120094337

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC187770

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein NKAPD1
    Names
    uncharacterized protein C11orf57 homolog

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127503.1 → NP_001120975.1  uncharacterized protein NKAPD1

      See identical proteins and their annotated locations for NP_001120975.1

      Status: PROVISIONAL

      Source sequence(s)
      BC161965
      UniProtKB/TrEMBL
      A0A0G2KAM6, B1WC13
      Related
      ENSRNOP00000075453.1, ENSRNOT00000086119.3
      Conserved Domains (1) summary
      pfam15692
      Location:92 → 143
      NKAP; NF-kappa-B-activating protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      59852037..59863295 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006243024.4 → XP_006243086.1  uncharacterized protein NKAPD1 isoform X1

      See identical proteins and their annotated locations for XP_006243086.1

      Conserved Domains (1) summary
      pfam15692
      Location:86 → 147
      NKAP; NF-kappa-B-activating protein

    2. XM_006243026.5 → XP_006243088.1  uncharacterized protein NKAPD1 isoform X2

      See identical proteins and their annotated locations for XP_006243088.1

      UniProtKB/TrEMBL
      A0A0G2KAM6, B1WC13
      Conserved Domains (1) summary
      pfam15692
      Location:92 → 143
      NKAP; NF-kappa-B-activating protein

    3. XM_006243025.5 → XP_006243087.1  uncharacterized protein NKAPD1 isoform X1

      See identical proteins and their annotated locations for XP_006243087.1

      Conserved Domains (1) summary
      pfam15692
      Location:86 → 147
      NKAP; NF-kappa-B-activating protein
    Nucleotide Protein Strain
    Heading Accession and Version

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