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    EMB93 Mitochondrial transcription termination factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814834, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EMB93
    Official Full Name
    Mitochondrial transcription termination factor family protein
    Primary source
    TAIR:AT2G03050
    Locus tag
    AT2G03050
    See related
    Araport:AT2G03050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EMBRYO DEFECTIVE 93; SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10; SOLDAT10; T17M13.22; T17M13_22
    Summary
    A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
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    Genomic context

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    See EMB93 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (899690..900999, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Toll-Interleukin-Resistance (TIR) domain family protein Neighboring gene emp24/gp25L/p24 family/GOLD family protein Neighboring gene AGAMOUS-like 30 Neighboring gene mediator subunit 8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A mutation in the Arabidopsis mTERF-related plastid protein SOLDAT10 activates retrograde signaling and suppresses (1)O(2)-induced cell death. Meskauskiene R, et al. Plant J, 2009 Nov. PMID 19563435
    2. Embryonic Lethals and T-DNA Insertional Mutagenesis in Arabidopsis. Errampalli D, et al. Plant Cell, 1991 Feb. PMID 12324593, Free PMC Article
    3. Plastid gene expression and plant development require a plastidic protein of the mitochondrial transcription termination factor family. Babiychuk E, et al. Proc Natl Acad Sci U S A, 2011 Apr 19. PMID 21464319, Free PMC Article
    4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_126357.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to singlet oxygen IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in chloroplast organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Mitochondrial transcription termination factor family protein
    NP_178405.2
    • EMBRYO DEFECTIVE 93 (EMB93); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cellular response to singlet oxygen, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G34620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      899690..900999 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335150.1 → NP_001324457.1  Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80618, Q84X53
      UniProtKB/TrEMBL
      A0A178VYV9, A0A5S9WWR4
      Conserved Domains (1) summary
      cl19765
      Location:72 → 269
      mTERF

    2. NM_126357.2 → NP_178405.2  Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178405.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84X53
      Conserved Domains (1) summary
      cl19765
      Location:71 → 268
      mTERF
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84X53.2

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