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    Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 815153, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    TAIR:AT2G06000
    Locus tag
    AT2G06000
    See related
    Araport:AT2G06000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T6P5.20; T6P5_20
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (2327253..2329873, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene FRIGIDA interacting protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_126613.4
    NM_201700.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_178657.1
    • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G09900.1); Has 50374 Blast hits to 14280 proteins in 277 species: Archae - 4; Bacteria - 40; Metazoa - 520; Fungi - 618; Plants - 47817; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink).
    NP_973429.1
    • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G09900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      2327253..2329873 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_201700.3 → NP_973429.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973429.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZUE9
      UniProtKB/TrEMBL
      A0A178VRL2, A0A654F323, B9DFG1
      Conserved Domains (5) summary
      TIGR00756
      Location:418 → 451
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:279 → 306
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:105 → 134
      PPR; PPR repeat
      pfam12854
      Location:273 → 303
      PPR_1; PPR repeat
      pfam13041
      Location:345 → 394
      PPR_2; PPR repeat family

    2. NM_126613.4 → NP_178657.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178657.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZUE9
      UniProtKB/TrEMBL
      A0A178VRL2, A0A654F323, B9DFG1
      Conserved Domains (5) summary
      TIGR00756
      Location:418 → 451
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:279 → 306
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:105 → 134
      PPR; PPR repeat
      pfam12854
      Location:273 → 303
      PPR_1; PPR repeat
      pfam13041
      Location:345 → 394
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZUE9.1

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