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    FZF Zinc finger protein 622 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816986, updated on 18-Sep-2024

    Summary

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    Official Symbol
    FZF
    Official Full Name
    Zinc finger protein 622
    Primary source
    TAIR:AT2G24500
    Locus tag
    AT2G24500
    See related
    Araport:AT2G24500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    C2H2 ZINC FINGER PROTEIN FZF; REI1-LIKE 2; REIL2; T28I24.23; T28I24_23
    Summary
    Encodes a C2H2 zinc finger protein FZF.
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    Genomic context

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    See FZF in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (10400630..10402934, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene filament-like protein (DUF869) Neighboring gene Zinc finger, C3HC4 type (RING finger) family protein Neighboring gene replicon protein A2 Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. STCH4/REIL2 Confers Cold Stress Tolerance in Arabidopsis by Promoting rRNA Processing and CBF Protein Translation. Yu H, et al. Cell Rep, 2020 Jan 7. PMID 31914389
    2. Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs. Beine-Golovchuk O, et al. Plant Physiol, 2018 Mar. PMID 29382692, Free PMC Article
    3. REIL proteins of Arabidopsis thaliana interact in yeast-2-hybrid assays with homologs of the yeast Rlp24, Rpl24A, Rlp24B, Arx1, and Jjj1 proteins. Schmidt S, et al. Plant Signal Behav, 2014. PMID 24603461, Free PMC Article
    4. The REIL1 and REIL2 proteins of Arabidopsis thaliana are required for leaf growth in the cold. Schmidt S, et al. Plant Physiol, 2013 Dec. PMID 24038679, Free PMC Article
    5. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. STCH4/REIL2 Confers Cold Stress Tolerance in Arabidopsis by Promoting rRNA Processing and CBF Protein Translation.
      Title: STCH4/REIL2 Confers Cold Stress Tolerance in Arabidopsis by Promoting rRNA Processing and CBF Protein Translation.
    2. REIL2 protein influences cold-induced plant ribosome remodeling and enhances the accumulation of cytosolic ribosome subunits after cold shift either by de novo synthesis or by recycling them from the translating ribosome fraction.
      Title: Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs.
    3. data consistent with a conserved role in ribosomal maturation
      Title: REIL proteins of Arabidopsis thaliana interact in yeast-2-hybrid assays with homologs of the yeast Rlp24, Rpl24A, Rlp24B, Arx1, and Jjj1 proteins.
    4. The A. thaliana REIL paralogs are required specifically in the cold (10C) but not for growth at optimal temperature (20C). [REIL2]
      Title: The REIL1 and REIL2 proteins of Arabidopsis thaliana are required for leaf growth in the cold.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_128011.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cold acclimation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within cold acclimation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of ribosome biogenesis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within rRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in ribosomal large subunit biogenesis IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Zinc finger protein 622
    NP_180026.1
    • FZF; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: Zinc finger protein 622 (TAIR:AT4G31420.1); Has 877 Blast hits to 864 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 359; Fungi - 284; Plants - 90; Viruses - 2; Other Eukaryotes - 142 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10400630..10402934 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128011.5 → NP_180026.1  Zinc finger protein 622 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180026.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZQ18
      UniProtKB/TrEMBL
      A0A178VZ79, A0A5S9X0T3
      Conserved Domains (3) summary
      sd00020
      Location:6 → 28
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12171
      Location:68 → 92
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
      pfam12756
      Location:173 → 275
      zf-C2H2_2; C2H2 type zinc-finger (2 copies)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZQ18.1

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