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    PR-1-LIKE pathogenesis-related protein-1-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816518, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PR-1-LIKE
    Official Full Name
    pathogenesis-related protein-1-like protein
    Primary source
    TAIR:AT2G19990
    Locus tag
    AT2G19990
    See related
    Araport:AT2G19990
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    pathogenesis-related protein-1-like; T2G17.21; T2G17_21
    Summary
    Encodes a PR-1-like protein homolog that is differentially expressed in resistant compared to susceptible cultivars by powdery mildew infection. The deduced amino acid sequence has 24 amino acids comprising the signal peptide and 140 amino acids of the mature peptide (15 kDa). Northern blot analysis showed accumulation of the corresponding mRNA 12 h after inoculation of resistant barley cultivars with Erysiphe graminis. Though the Genbank record for the cDNA associated to this gene model is called 'PR-1', the sequence actually corresponds to PR-1-like. Expression of this gene is not salicylic-acid responsive.
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    Genomic context

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    See PR-1-LIKE in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (8629857..8630688, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Neighboring gene CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Neighboring gene CDC27 family protein Neighboring gene Gls protein (DUF810)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Salicylic Acid Acts Antagonistically to Plastid Retrograde Signaling by Promoting the Accumulation of Photosynthesis-associated Proteins in Arabidopsis. Hirosawa Y, et al. Plant Cell Physiol, 2021 Dec 10. PMID 34410430
    2. PRH1 mediates ARF7-LBD dependent auxin signaling to regulate lateral root development in Arabidopsis thaliana. Zhang F, et al. PLoS Genet, 2020 Feb. PMID 32032352, Free PMC Article
    3. Inappropriate annotation of a key defence marker in Arabidopsis: will the real PR-1 please stand up? Laird J, et al. Planta, 2004 Oct. PMID 15293050
    4. Characterization of wound-responsive RNA-binding proteins and their splice variants in Arabidopsis. Bove J, et al. Plant Mol Biol, 2008 May. PMID 18278441
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Salicylic Acid Acts Antagonistically to Plastid Retrograde Signaling by Promoting the Accumulation of Photosynthesis-associated Proteins in Arabidopsis.
      Title: Salicylic Acid Acts Antagonistically to Plastid Retrograde Signaling by Promoting the Accumulation of Photosynthesis-associated Proteins in Arabidopsis.
    2. In Arabidopsis thaliana the product of PRH1, a PR-1 homolog annotated previously as encoding a pathogen-responsive protein, was identified as a target of AUXIN RESPONSE FACTOR7 (ARF7)-mediated auxin signaling and as participating in the development of lateral roots. The transcription of PRH1 was controlled by the binding of both ARF7 and LATERAL ORGAN BOUNDARIES DOMAIN (LBD) transcription factors to its promoter region.
      Title: PRH1 mediates ARF7-LBD dependent auxin signaling to regulate lateral root development in Arabidopsis thaliana.
    3. Expression in comparison to At2g14610; recommendation to change the annotation.
      Title: Inappropriate annotation of a key defence marker in Arabidopsis: will the real PR-1 please stand up?
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_127557.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    pathogenesis-related protein-1-like protein
    NP_179589.1
    • pathogenesis-related protein-1-like (PR-1-LIKE); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT4G33720.1); Has 3036 Blast hits to 2941 proteins in 366 species: Archae - 0; Bacteria - 64; Metazoa - 1638; Fungi - 337; Plants - 905; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8629857..8630688 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127557.3 → NP_179589.1  pathogenesis-related protein-1-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179589.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VRT6, A0A7G2EBX0, Q39186
      Conserved Domains (1) summary
      cd05381
      Location:42 → 176
      CAP_PR-1; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain of pathogenesis-related protein 1 (PR-1) family proteins
    Nucleotide Protein
    Heading Accession and Version

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