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    LCR5 low-molecular-weight cysteine-rich 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817383, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LCR5
    Official Full Name
    low-molecular-weight cysteine-rich 5
    Primary source
    TAIR:AT2G28355
    Locus tag
    AT2G28355
    See related
    Araport:AT2G28355
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    low-molecular-weight cysteine-rich 5
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    Genomic context

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    See LCR5 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (12119285..12120512)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene GATA transcription factor 13 Neighboring gene auxin response factor 10 Neighboring gene SIT4 phosphatase-associated family protein Neighboring gene Uncharacterized protein family (UPF0497) Neighboring gene dsRNA-binding protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    NM_128395.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    low-molecular-weight cysteine-rich 5
    NP_565670.1
    • low-molecular-weight cysteine-rich 5 (LCR5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 14 (TAIR:AT2G25344.1); Has 75 Blast hits to 75 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12119285..12120512
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128395.3 → NP_565670.1  low-molecular-weight cysteine-rich 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565670.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P82720, Q8LGD4, Q8S8H3
      UniProtKB/TrEMBL
      A0A178VT26, A0A5S9X1Z1
      Conserved Domains (1) summary
      pfam07333
      Location:33 → 77
      SLR1-BP; S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8S8H3.1

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