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    pre-mRNA cleavage complex 2 Pcf11-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818222, updated on 18-Sep-2024

    Summary

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    Official Full Name
    pre-mRNA cleavage complex 2 Pcf11-like protein
    Primary source
    TAIR:AT2G36480
    Locus tag
    AT2G36480
    See related
    Araport:AT2G36480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1O11.23
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    8
    Sequence:
    Chromosome: 2; NC_003071.7 (15302867..15307809, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Aldolase superfamily protein Neighboring gene DUF868 family protein, putative (DUF868) Neighboring gene ncRNA Neighboring gene demeter-like 1 Neighboring gene CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001336599.1
    NM_001336600.1

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in mRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    pre-mRNA cleavage complex 2 Pcf11-like protein
    NP_001318365.1
    • ENTH/VHS family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), RNA polymerase II, large subunit, CTD (InterPro:IPR006569), Zinc finger, C2H2-type (InterPro:IPR007087), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: PCF11P-similar protein 4 (TAIR:AT4G04885.1); Has 1796 Blast hits to 853 proteins in 236 species: Archae - 0; Bacteria - 131; Metazoa - 390; Fungi - 345; Plants - 130; Viruses - 0; Other Eukaryotes - 800 (source: NCBI BLink).
    NP_001318366.1
    • ENTH/VHS family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), RNA polymerase II, large subunit, CTD (InterPro:IPR006569), Zinc finger, C2H2-type (InterPro:IPR007087), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: PCF11P-similar protein 4 (TAIR:AT4G04885.1); Has 1695 Blast hits to 821 proteins in 229 species: Archae - 0; Bacteria - 223; Metazoa - 395; Fungi - 309; Plants - 134; Viruses - 0; Other Eukaryotes - 634 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15302867..15307809 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336600.1 → NP_001318366.1  pre-mRNA cleavage complex 2 Pcf11-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EHM9, F4IMX8, F4IMY0

    2. NM_001336599.1 → NP_001318365.1  pre-mRNA cleavage complex 2 Pcf11-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EHM9, F4IMX8, F4IMY0
    Nucleotide Protein
    Heading Accession and Version

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