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    Caleosin-related family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838934, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Caleosin-related family protein
    Primary source
    TAIR:AT1G23250
    Locus tag
    AT1G23250
    See related
    Araport:AT1G23250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F26F24.9; F26F24_9
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (8255127..8256770, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit Neighboring gene Caleosin-related family protein Neighboring gene MMS ZWEI homologue 1 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The caleosin CLO7 and its role in the heterotrimeric G-protein signalling network. Brunetti SC, et al. J Plant Physiol, 2022 Dec. PMID 36334585
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of seed germination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Caleosin-related family protein
    NP_173739.4
    • Caleosin-related family protein; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: Caleosin-related family protein (TAIR:AT1G23240.1); Has 299 Blast hits to 298 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 58; Plants - 240; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8255127..8256770 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102174.5 → NP_173739.4  Caleosin-related family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173739.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I4P8
      UniProtKB/TrEMBL
      A0A654EDX8
      Conserved Domains (1) summary
      pfam05042
      Location:50 → 188
      Caleosin; Caleosin related protein

    2. NM_001332596.1 → NP_001322269.1  Caleosin-related family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ATG9, A0A654EDX8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4I4P8.1

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